Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01850

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01845 and AZOBR_RS01850 are separated by 112 nucleotidesAZOBR_RS01850 and AZOBR_RS01855 are separated by 343 nucleotides AZOBR_RS01845: AZOBR_RS01845 - leucyl-tRNA synthetase, at 374,996 to 377,566 _RS01845 AZOBR_RS01850: AZOBR_RS01850 - hypothetical protein, at 377,679 to 378,218 _RS01850 AZOBR_RS01855: AZOBR_RS01855 - major outer membrane protein OmaA, at 378,562 to 379,734 _RS01855 Position (kb) 377 378 379Strain fitness (log2 ratio) -3 -2 -1 0 1at 377.602 kb on - strandat 377.610 kb on - strandat 377.858 kb on - strand, within AZOBR_RS01850at 377.903 kb on - strand, within AZOBR_RS01850at 378.290 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 3 days
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377,602 - +0.6
377,610 - +0.7
377,858 - AZOBR_RS01850 0.33 -2.0
377,903 - AZOBR_RS01850 0.41 -3.4
378,290 - -1.6

Or see this region's nucleotide sequence