Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27945

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27935 and AO353_27940 are separated by 35 nucleotidesAO353_27940 and AO353_27945 are separated by 23 nucleotidesAO353_27945 and AO353_27950 overlap by 4 nucleotidesAO353_27950 and AO353_27955 are separated by 12 nucleotides AO353_27935: AO353_27935 - succinyl-CoA--3-ketoacid-CoA transferase, at 6,094,972 to 6,095,670 _27935 AO353_27940: AO353_27940 - succinyl-CoA--3-ketoacid-CoA transferase, at 6,095,706 to 6,096,365 _27940 AO353_27945: AO353_27945 - acetyl-CoA acetyltransferase, at 6,096,389 to 6,097,570 _27945 AO353_27950: AO353_27950 - hypothetical protein, at 6,097,567 to 6,097,878 _27950 AO353_27955: AO353_27955 - tyrosyl-trna synthetase, at 6,097,891 to 6,098,427 _27955 Position (kb) 6096 6097 6098Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6095.480 kb on - strandat 6095.605 kb on + strandat 6095.605 kb on + strandat 6095.605 kb on + strandat 6095.605 kb on + strandat 6095.605 kb on + strandat 6095.605 kb on + strandat 6095.605 kb on + strandat 6095.605 kb on + strandat 6095.605 kb on + strandat 6095.606 kb on - strandat 6095.606 kb on - strandat 6095.606 kb on - strandat 6095.606 kb on - strandat 6095.606 kb on - strandat 6095.606 kb on - strandat 6095.606 kb on - strandat 6095.644 kb on - strandat 6095.714 kb on + strandat 6095.764 kb on - strandat 6095.766 kb on + strandat 6095.767 kb on - strandat 6095.767 kb on - strandat 6095.767 kb on - strandat 6095.767 kb on - strandat 6095.767 kb on - strandat 6095.808 kb on + strand, within AO353_27940at 6095.808 kb on + strand, within AO353_27940at 6095.808 kb on + strand, within AO353_27940at 6095.808 kb on + strand, within AO353_27940at 6095.808 kb on + strand, within AO353_27940at 6095.808 kb on + strand, within AO353_27940at 6095.808 kb on + strand, within AO353_27940at 6095.808 kb on + strand, within AO353_27940at 6095.808 kb on + strand, within AO353_27940at 6095.809 kb on - strand, within AO353_27940at 6095.809 kb on - strand, within AO353_27940at 6095.809 kb on - strand, within AO353_27940at 6095.885 kb on + strand, within AO353_27940at 6096.031 kb on + strand, within AO353_27940at 6096.032 kb on - strand, within AO353_27940at 6096.032 kb on - strand, within AO353_27940at 6096.032 kb on - strand, within AO353_27940at 6096.174 kb on + strand, within AO353_27940at 6096.175 kb on - strand, within AO353_27940at 6096.234 kb on + strand, within AO353_27940at 6096.320 kb on + strandat 6096.755 kb on + strand, within AO353_27945at 6096.755 kb on + strand, within AO353_27945at 6096.755 kb on + strand, within AO353_27945at 6096.755 kb on + strand, within AO353_27945at 6096.756 kb on - strand, within AO353_27945at 6096.756 kb on - strand, within AO353_27945at 6096.756 kb on - strand, within AO353_27945at 6096.756 kb on - strand, within AO353_27945at 6096.852 kb on - strand, within AO353_27945at 6096.890 kb on + strand, within AO353_27945at 6096.890 kb on + strand, within AO353_27945at 6096.890 kb on + strand, within AO353_27945at 6096.890 kb on + strand, within AO353_27945at 6096.890 kb on + strand, within AO353_27945at 6096.890 kb on + strand, within AO353_27945at 6096.891 kb on - strand, within AO353_27945at 6096.891 kb on - strand, within AO353_27945at 6096.891 kb on - strand, within AO353_27945at 6097.439 kb on - strand, within AO353_27945at 6097.568 kb on + strandat 6097.705 kb on + strand, within AO353_27950at 6097.777 kb on - strand, within AO353_27950at 6098.154 kb on + strand, within AO353_27955at 6098.154 kb on + strand, within AO353_27955at 6098.154 kb on + strand, within AO353_27955at 6098.154 kb on + strand, within AO353_27955at 6098.154 kb on + strand, within AO353_27955at 6098.154 kb on + strand, within AO353_27955at 6098.154 kb on + strand, within AO353_27955at 6098.154 kb on + strand, within AO353_27955at 6098.154 kb on + strand, within AO353_27955at 6098.154 kb on + strand, within AO353_27955at 6098.154 kb on + strand, within AO353_27955at 6098.154 kb on + strand, within AO353_27955at 6098.155 kb on - strand, within AO353_27955at 6098.155 kb on - strand, within AO353_27955at 6098.155 kb on - strand, within AO353_27955at 6098.210 kb on + strand, within AO353_27955at 6098.210 kb on + strand, within AO353_27955at 6098.210 kb on + strand, within AO353_27955at 6098.210 kb on + strand, within AO353_27955at 6098.211 kb on - strand, within AO353_27955at 6098.211 kb on - strand, within AO353_27955at 6098.211 kb on - strand, within AO353_27955at 6098.211 kb on - strand, within AO353_27955at 6098.211 kb on - strand, within AO353_27955at 6098.220 kb on + strand, within AO353_27955at 6098.221 kb on - strand, within AO353_27955at 6098.455 kb on + strandat 6098.455 kb on + strandat 6098.455 kb on + strandat 6098.455 kb on + strandat 6098.456 kb on - strandat 6098.456 kb on - strandat 6098.456 kb on - strandat 6098.456 kb on - strandat 6098.456 kb on - strandat 6098.456 kb on - strandat 6098.456 kb on - strandat 6098.525 kb on - strandat 6098.538 kb on + strandat 6098.551 kb on + strandat 6098.551 kb on + strandat 6098.551 kb on + strandat 6098.551 kb on + strandat 6098.552 kb on - strandat 6098.552 kb on - strandat 6098.552 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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6,095,480 - -0.0
6,095,605 + -0.2
6,095,605 + -0.4
6,095,605 + -0.6
6,095,605 + +0.1
6,095,605 + +1.2
6,095,605 + -2.0
6,095,605 + -1.2
6,095,605 + -1.0
6,095,605 + +0.9
6,095,606 - -1.0
6,095,606 - -0.0
6,095,606 - +1.4
6,095,606 - -1.1
6,095,606 - -1.4
6,095,606 - +0.6
6,095,606 - -0.0
6,095,644 - -1.0
6,095,714 + -1.6
6,095,764 - -1.9
6,095,766 + -0.5
6,095,767 - +1.8
6,095,767 - -0.4
6,095,767 - -0.1
6,095,767 - -1.6
6,095,767 - +1.0
6,095,808 + AO353_27940 0.15 -0.6
6,095,808 + AO353_27940 0.15 +0.6
6,095,808 + AO353_27940 0.15 -2.7
6,095,808 + AO353_27940 0.15 -1.1
6,095,808 + AO353_27940 0.15 -0.7
6,095,808 + AO353_27940 0.15 -1.7
6,095,808 + AO353_27940 0.15 -0.0
6,095,808 + AO353_27940 0.15 -1.0
6,095,808 + AO353_27940 0.15 -0.6
6,095,809 - AO353_27940 0.16 -1.0
6,095,809 - AO353_27940 0.16 +0.6
6,095,809 - AO353_27940 0.16 +0.2
6,095,885 + AO353_27940 0.27 -1.8
6,096,031 + AO353_27940 0.49 +0.2
6,096,032 - AO353_27940 0.49 -1.3
6,096,032 - AO353_27940 0.49 -1.0
6,096,032 - AO353_27940 0.49 -1.0
6,096,174 + AO353_27940 0.71 -0.0
6,096,175 - AO353_27940 0.71 -1.6
6,096,234 + AO353_27940 0.80 -1.6
6,096,320 + -2.3
6,096,755 + AO353_27945 0.31 +0.6
6,096,755 + AO353_27945 0.31 -0.9
6,096,755 + AO353_27945 0.31 -0.5
6,096,755 + AO353_27945 0.31 -0.7
6,096,756 - AO353_27945 0.31 -0.4
6,096,756 - AO353_27945 0.31 +0.1
6,096,756 - AO353_27945 0.31 -1.4
6,096,756 - AO353_27945 0.31 +0.3
6,096,852 - AO353_27945 0.39 -0.0
6,096,890 + AO353_27945 0.42 -0.6
6,096,890 + AO353_27945 0.42 -0.3
6,096,890 + AO353_27945 0.42 +0.3
6,096,890 + AO353_27945 0.42 -0.9
6,096,890 + AO353_27945 0.42 +0.3
6,096,890 + AO353_27945 0.42 -1.6
6,096,891 - AO353_27945 0.42 -1.7
6,096,891 - AO353_27945 0.42 -0.0
6,096,891 - AO353_27945 0.42 -1.8
6,097,439 - AO353_27945 0.89 -0.9
6,097,568 + +0.3
6,097,705 + AO353_27950 0.44 +0.9
6,097,777 - AO353_27950 0.67 -1.2
6,098,154 + AO353_27955 0.49 +0.0
6,098,154 + AO353_27955 0.49 +0.0
6,098,154 + AO353_27955 0.49 -2.5
6,098,154 + AO353_27955 0.49 +0.9
6,098,154 + AO353_27955 0.49 -1.9
6,098,154 + AO353_27955 0.49 +0.2
6,098,154 + AO353_27955 0.49 +0.5
6,098,154 + AO353_27955 0.49 +1.9
6,098,154 + AO353_27955 0.49 -0.6
6,098,154 + AO353_27955 0.49 -2.3
6,098,154 + AO353_27955 0.49 +0.0
6,098,154 + AO353_27955 0.49 -0.8
6,098,155 - AO353_27955 0.49 +0.7
6,098,155 - AO353_27955 0.49 -0.8
6,098,155 - AO353_27955 0.49 -0.1
6,098,210 + AO353_27955 0.59 +0.3
6,098,210 + AO353_27955 0.59 +0.2
6,098,210 + AO353_27955 0.59 -0.6
6,098,210 + AO353_27955 0.59 +0.8
6,098,211 - AO353_27955 0.60 -0.1
6,098,211 - AO353_27955 0.60 -2.0
6,098,211 - AO353_27955 0.60 +0.5
6,098,211 - AO353_27955 0.60 -1.7
6,098,211 - AO353_27955 0.60 +0.6
6,098,220 + AO353_27955 0.61 -0.7
6,098,221 - AO353_27955 0.61 -0.2
6,098,455 + +0.8
6,098,455 + +0.5
6,098,455 + +1.3
6,098,455 + +0.6
6,098,456 - +1.2
6,098,456 - -1.0
6,098,456 - -0.4
6,098,456 - +0.1
6,098,456 - +1.5
6,098,456 - -0.8
6,098,456 - -0.6
6,098,525 - -0.9
6,098,538 + +0.5
6,098,551 + -2.9
6,098,551 + +2.3
6,098,551 + -0.1
6,098,551 + -2.1
6,098,552 - +2.6
6,098,552 - -0.6
6,098,552 - +1.2

Or see this region's nucleotide sequence