Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26655

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26650 and AO353_26655 are separated by 316 nucleotidesAO353_26655 and AO353_26660 are separated by 56 nucleotides AO353_26650: AO353_26650 - dihydrolipoamide dehydrogenase, at 5,835,117 to 5,836,502 _26650 AO353_26655: AO353_26655 - branched-chain amino acid aminotransferase, at 5,836,819 to 5,837,838 _26655 AO353_26660: AO353_26660 - LysR family transcriptional regulator, at 5,837,895 to 5,838,788 _26660 Position (kb) 5836 5837 5838Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5835.848 kb on + strand, within AO353_26650at 5835.924 kb on - strandat 5836.177 kb on + strand, within AO353_26650at 5836.177 kb on + strand, within AO353_26650at 5836.184 kb on + strand, within AO353_26650at 5836.492 kb on + strandat 5836.492 kb on + strandat 5836.492 kb on + strandat 5836.492 kb on + strandat 5836.493 kb on - strandat 5836.493 kb on - strandat 5836.580 kb on + strandat 5836.580 kb on + strandat 5836.601 kb on - strandat 5836.712 kb on + strandat 5836.729 kb on + strandat 5836.745 kb on + strandat 5836.745 kb on + strandat 5836.745 kb on + strandat 5836.745 kb on + strandat 5836.745 kb on + strandat 5836.745 kb on + strandat 5836.745 kb on + strandat 5836.745 kb on + strandat 5836.745 kb on + strandat 5836.745 kb on + strandat 5836.746 kb on - strandat 5836.746 kb on - strandat 5836.746 kb on - strandat 5836.746 kb on - strandat 5836.746 kb on - strandat 5836.746 kb on - strandat 5836.746 kb on - strandat 5836.746 kb on - strandat 5836.746 kb on - strandat 5836.801 kb on + strandat 5836.802 kb on - strandat 5836.808 kb on + strandat 5836.861 kb on + strandat 5836.861 kb on + strandat 5836.862 kb on - strandat 5836.862 kb on - strandat 5836.862 kb on - strandat 5836.862 kb on - strandat 5836.882 kb on + strandat 5836.883 kb on - strandat 5836.883 kb on - strandat 5836.883 kb on - strandat 5836.975 kb on + strand, within AO353_26655at 5837.191 kb on + strand, within AO353_26655at 5837.191 kb on + strand, within AO353_26655at 5837.238 kb on + strand, within AO353_26655at 5837.253 kb on + strand, within AO353_26655at 5837.253 kb on + strand, within AO353_26655at 5837.254 kb on - strand, within AO353_26655at 5837.287 kb on + strand, within AO353_26655at 5837.287 kb on + strand, within AO353_26655at 5837.288 kb on - strand, within AO353_26655at 5837.333 kb on - strand, within AO353_26655at 5837.383 kb on + strand, within AO353_26655at 5837.383 kb on + strand, within AO353_26655at 5837.384 kb on - strandat 5837.443 kb on + strand, within AO353_26655at 5837.443 kb on + strand, within AO353_26655at 5837.443 kb on + strand, within AO353_26655at 5837.443 kb on + strand, within AO353_26655at 5837.444 kb on - strand, within AO353_26655at 5837.708 kb on - strand, within AO353_26655at 5837.770 kb on + strandat 5837.770 kb on + strandat 5837.770 kb on + strandat 5837.771 kb on - strandat 5837.896 kb on + strandat 5837.897 kb on - strandat 5837.910 kb on + strandat 5837.910 kb on + strandat 5837.911 kb on - strandat 5837.911 kb on - strandat 5837.980 kb on + strandat 5837.980 kb on + strandat 5837.981 kb on - strandat 5837.981 kb on - strandat 5837.983 kb on + strandat 5837.983 kb on + strandat 5837.984 kb on - strandat 5837.984 kb on - strandat 5837.984 kb on - strandat 5837.984 kb on - strandat 5837.984 kb on - strandat 5837.984 kb on - strandat 5837.984 kb on - strandat 5837.984 kb on - strandat 5837.984 kb on - strandat 5837.984 kb on - strandat 5837.984 kb on - strandat 5837.984 kb on - strandat 5838.002 kb on + strand, within AO353_26660at 5838.003 kb on - strand, within AO353_26660at 5838.079 kb on - strand, within AO353_26660at 5838.079 kb on - strand, within AO353_26660at 5838.221 kb on + strand, within AO353_26660at 5838.221 kb on + strand, within AO353_26660at 5838.221 kb on + strand, within AO353_26660at 5838.221 kb on + strand, within AO353_26660at 5838.221 kb on + strand, within AO353_26660at 5838.221 kb on + strand, within AO353_26660at 5838.221 kb on + strand, within AO353_26660at 5838.221 kb on + strand, within AO353_26660at 5838.221 kb on + strand, within AO353_26660at 5838.222 kb on - strand, within AO353_26660at 5838.222 kb on - strand, within AO353_26660at 5838.222 kb on - strand, within AO353_26660at 5838.222 kb on - strand, within AO353_26660at 5838.222 kb on - strand, within AO353_26660at 5838.222 kb on - strand, within AO353_26660at 5838.222 kb on - strand, within AO353_26660at 5838.309 kb on + strand, within AO353_26660at 5838.309 kb on + strand, within AO353_26660at 5838.309 kb on + strand, within AO353_26660at 5838.310 kb on - strand, within AO353_26660at 5838.319 kb on + strand, within AO353_26660at 5838.319 kb on + strand, within AO353_26660at 5838.319 kb on + strand, within AO353_26660at 5838.319 kb on + strand, within AO353_26660at 5838.319 kb on + strand, within AO353_26660at 5838.319 kb on + strand, within AO353_26660at 5838.320 kb on - strand, within AO353_26660at 5838.320 kb on - strand, within AO353_26660at 5838.320 kb on - strand, within AO353_26660at 5838.320 kb on - strand, within AO353_26660at 5838.320 kb on - strand, within AO353_26660at 5838.580 kb on + strand, within AO353_26660at 5838.580 kb on + strand, within AO353_26660at 5838.580 kb on + strand, within AO353_26660at 5838.580 kb on + strand, within AO353_26660at 5838.581 kb on - strand, within AO353_26660at 5838.581 kb on - strand, within AO353_26660at 5838.581 kb on - strand, within AO353_26660at 5838.807 kb on + strandat 5838.808 kb on - strandat 5838.808 kb on - strandat 5838.820 kb on + strandat 5838.820 kb on + strandat 5838.820 kb on + strandat 5838.820 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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5,835,848 + AO353_26650 0.53 -0.0
5,835,924 - -0.5
5,836,177 + AO353_26650 0.76 -0.7
5,836,177 + AO353_26650 0.76 -1.8
5,836,184 + AO353_26650 0.77 -1.1
5,836,492 + +0.2
5,836,492 + +1.8
5,836,492 + -0.3
5,836,492 + +0.7
5,836,493 - -0.3
5,836,493 - -1.9
5,836,580 + -0.5
5,836,580 + -1.2
5,836,601 - -2.7
5,836,712 + -0.7
5,836,729 + +0.2
5,836,745 + +0.7
5,836,745 + -1.5
5,836,745 + +0.8
5,836,745 + +0.7
5,836,745 + -1.3
5,836,745 + +0.1
5,836,745 + -0.2
5,836,745 + -0.8
5,836,745 + -0.0
5,836,745 + -1.6
5,836,746 - -0.7
5,836,746 - -1.7
5,836,746 - -1.9
5,836,746 - -0.5
5,836,746 - +0.5
5,836,746 - -2.1
5,836,746 - +0.1
5,836,746 - -0.3
5,836,746 - -0.2
5,836,801 + +0.5
5,836,802 - +2.0
5,836,808 + +0.3
5,836,861 + -1.1
5,836,861 + +0.4
5,836,862 - +0.5
5,836,862 - -0.1
5,836,862 - -1.4
5,836,862 - -1.6
5,836,882 + +0.5
5,836,883 - +0.2
5,836,883 - +0.9
5,836,883 - -0.9
5,836,975 + AO353_26655 0.15 +0.2
5,837,191 + AO353_26655 0.36 -0.1
5,837,191 + AO353_26655 0.36 +0.2
5,837,238 + AO353_26655 0.41 -1.0
5,837,253 + AO353_26655 0.43 -1.6
5,837,253 + AO353_26655 0.43 +0.6
5,837,254 - AO353_26655 0.43 +0.0
5,837,287 + AO353_26655 0.46 -1.7
5,837,287 + AO353_26655 0.46 -1.3
5,837,288 - AO353_26655 0.46 -3.2
5,837,333 - AO353_26655 0.50 -0.7
5,837,383 + AO353_26655 0.55 +1.1
5,837,383 + AO353_26655 0.55 -0.5
5,837,384 - +0.5
5,837,443 + AO353_26655 0.61 -2.3
5,837,443 + AO353_26655 0.61 +0.9
5,837,443 + AO353_26655 0.61 +0.9
5,837,443 + AO353_26655 0.61 -1.5
5,837,444 - AO353_26655 0.61 -1.7
5,837,708 - AO353_26655 0.87 +0.5
5,837,770 + -2.1
5,837,770 + -0.8
5,837,770 + -0.2
5,837,771 - -2.7
5,837,896 + -1.0
5,837,897 - -0.7
5,837,910 + +0.0
5,837,910 + +0.9
5,837,911 - +0.4
5,837,911 - -1.1
5,837,980 + +0.9
5,837,980 + +0.2
5,837,981 - -1.0
5,837,981 - +0.3
5,837,983 + -0.1
5,837,983 + +2.1
5,837,984 - -0.5
5,837,984 - +0.2
5,837,984 - -0.9
5,837,984 - -0.0
5,837,984 - +0.9
5,837,984 - -1.2
5,837,984 - +0.7
5,837,984 - -0.4
5,837,984 - -0.0
5,837,984 - +0.8
5,837,984 - -1.0
5,837,984 - -2.1
5,838,002 + AO353_26660 0.12 -0.7
5,838,003 - AO353_26660 0.12 -0.5
5,838,079 - AO353_26660 0.21 +0.0
5,838,079 - AO353_26660 0.21 +0.1
5,838,221 + AO353_26660 0.36 -0.5
5,838,221 + AO353_26660 0.36 -0.2
5,838,221 + AO353_26660 0.36 -0.7
5,838,221 + AO353_26660 0.36 -0.1
5,838,221 + AO353_26660 0.36 -0.2
5,838,221 + AO353_26660 0.36 -0.7
5,838,221 + AO353_26660 0.36 -0.7
5,838,221 + AO353_26660 0.36 -0.3
5,838,221 + AO353_26660 0.36 -0.2
5,838,222 - AO353_26660 0.37 -0.2
5,838,222 - AO353_26660 0.37 -1.4
5,838,222 - AO353_26660 0.37 -1.1
5,838,222 - AO353_26660 0.37 +0.8
5,838,222 - AO353_26660 0.37 -0.5
5,838,222 - AO353_26660 0.37 -0.6
5,838,222 - AO353_26660 0.37 -1.1
5,838,309 + AO353_26660 0.46 +0.1
5,838,309 + AO353_26660 0.46 -0.3
5,838,309 + AO353_26660 0.46 +0.0
5,838,310 - AO353_26660 0.46 +0.3
5,838,319 + AO353_26660 0.47 -0.8
5,838,319 + AO353_26660 0.47 -0.7
5,838,319 + AO353_26660 0.47 +1.5
5,838,319 + AO353_26660 0.47 -0.1
5,838,319 + AO353_26660 0.47 -2.8
5,838,319 + AO353_26660 0.47 +0.5
5,838,320 - AO353_26660 0.48 -0.6
5,838,320 - AO353_26660 0.48 -0.2
5,838,320 - AO353_26660 0.48 -0.7
5,838,320 - AO353_26660 0.48 -0.7
5,838,320 - AO353_26660 0.48 -1.2
5,838,580 + AO353_26660 0.77 +0.9
5,838,580 + AO353_26660 0.77 -1.2
5,838,580 + AO353_26660 0.77 -0.3
5,838,580 + AO353_26660 0.77 -1.3
5,838,581 - AO353_26660 0.77 -0.8
5,838,581 - AO353_26660 0.77 -0.8
5,838,581 - AO353_26660 0.77 -1.3
5,838,807 + -0.1
5,838,808 - -1.1
5,838,808 - +1.9
5,838,820 + +0.4
5,838,820 + -2.6
5,838,820 + -0.9
5,838,820 + +0.2

Or see this region's nucleotide sequence