Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25970

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25960 and AO353_25965 are separated by 246 nucleotidesAO353_25965 and AO353_25970 are separated by 11 nucleotidesAO353_25970 and AO353_25975 are separated by 102 nucleotides AO353_25960: AO353_25960 - threonine dehydratase, at 5,721,623 to 5,722,630 _25960 AO353_25965: AO353_25965 - hypothetical protein, at 5,722,877 to 5,723,212 _25965 AO353_25970: AO353_25970 - asparaginase, at 5,723,224 to 5,724,264 _25970 AO353_25975: AO353_25975 - carboxylate--amine ligase, at 5,724,367 to 5,725,953 _25975 Position (kb) 5723 5724 5725Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5722.425 kb on + strand, within AO353_25960at 5722.425 kb on + strand, within AO353_25960at 5722.426 kb on - strand, within AO353_25960at 5722.549 kb on - strandat 5722.549 kb on - strandat 5722.549 kb on - strandat 5722.578 kb on + strandat 5722.579 kb on - strandat 5722.726 kb on - strandat 5722.741 kb on + strandat 5722.741 kb on + strandat 5722.742 kb on - strandat 5722.742 kb on - strandat 5722.789 kb on - strandat 5722.789 kb on - strandat 5722.925 kb on + strand, within AO353_25965at 5722.928 kb on - strand, within AO353_25965at 5723.000 kb on - strand, within AO353_25965at 5723.025 kb on - strandat 5723.057 kb on + strand, within AO353_25965at 5723.057 kb on + strand, within AO353_25965at 5723.058 kb on - strand, within AO353_25965at 5723.058 kb on - strand, within AO353_25965at 5723.058 kb on - strand, within AO353_25965at 5723.058 kb on - strand, within AO353_25965at 5723.124 kb on + strand, within AO353_25965at 5723.150 kb on + strand, within AO353_25965at 5723.150 kb on + strand, within AO353_25965at 5723.150 kb on + strand, within AO353_25965at 5723.150 kb on + strand, within AO353_25965at 5723.150 kb on + strand, within AO353_25965at 5723.151 kb on - strand, within AO353_25965at 5723.151 kb on - strand, within AO353_25965at 5723.226 kb on - strandat 5723.226 kb on - strandat 5723.269 kb on + strandat 5723.269 kb on + strandat 5723.269 kb on + strandat 5723.269 kb on + strandat 5723.270 kb on - strandat 5723.270 kb on - strandat 5723.368 kb on + strand, within AO353_25970at 5723.368 kb on + strand, within AO353_25970at 5723.369 kb on - strand, within AO353_25970at 5723.375 kb on + strand, within AO353_25970at 5723.375 kb on + strand, within AO353_25970at 5723.376 kb on - strand, within AO353_25970at 5723.446 kb on + strand, within AO353_25970at 5723.446 kb on + strand, within AO353_25970at 5723.446 kb on + strand, within AO353_25970at 5723.446 kb on + strand, within AO353_25970at 5723.448 kb on + strand, within AO353_25970at 5723.459 kb on + strand, within AO353_25970at 5723.459 kb on + strand, within AO353_25970at 5723.460 kb on - strand, within AO353_25970at 5723.460 kb on - strand, within AO353_25970at 5723.460 kb on - strand, within AO353_25970at 5723.460 kb on - strand, within AO353_25970at 5723.460 kb on - strand, within AO353_25970at 5723.520 kb on + strand, within AO353_25970at 5723.521 kb on - strand, within AO353_25970at 5723.521 kb on - strandat 5723.555 kb on + strandat 5723.555 kb on + strand, within AO353_25970at 5723.555 kb on + strand, within AO353_25970at 5723.555 kb on + strand, within AO353_25970at 5723.556 kb on - strand, within AO353_25970at 5723.556 kb on - strand, within AO353_25970at 5723.638 kb on + strand, within AO353_25970at 5723.639 kb on - strand, within AO353_25970at 5723.639 kb on - strand, within AO353_25970at 5723.795 kb on + strand, within AO353_25970at 5723.850 kb on + strand, within AO353_25970at 5723.850 kb on + strandat 5724.001 kb on - strand, within AO353_25970at 5724.018 kb on + strand, within AO353_25970at 5724.019 kb on - strand, within AO353_25970at 5724.019 kb on - strand, within AO353_25970at 5724.019 kb on - strand, within AO353_25970at 5724.219 kb on + strandat 5724.219 kb on + strandat 5724.219 kb on + strandat 5724.220 kb on - strandat 5724.220 kb on - strandat 5724.220 kb on - strandat 5724.223 kb on - strandat 5724.231 kb on - strandat 5724.314 kb on + strandat 5724.315 kb on - strandat 5724.329 kb on + strandat 5724.329 kb on + strandat 5724.329 kb on + strandat 5724.329 kb on + strandat 5724.329 kb on + strandat 5724.329 kb on + strandat 5724.330 kb on - strandat 5724.330 kb on - strandat 5724.330 kb on - strandat 5724.339 kb on + strandat 5724.422 kb on - strandat 5724.431 kb on + strandat 5724.431 kb on + strandat 5724.431 kb on + strandat 5724.431 kb on + strandat 5724.431 kb on + strandat 5724.432 kb on - strandat 5724.432 kb on - strandat 5724.449 kb on + strandat 5724.449 kb on + strandat 5724.450 kb on - strandat 5724.450 kb on - strandat 5724.450 kb on - strandat 5724.450 kb on - strandat 5724.540 kb on - strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.662 kb on + strand, within AO353_25975at 5724.663 kb on - strand, within AO353_25975at 5724.663 kb on - strand, within AO353_25975at 5724.663 kb on - strand, within AO353_25975at 5724.663 kb on - strand, within AO353_25975at 5724.693 kb on - strand, within AO353_25975at 5724.693 kb on - strand, within AO353_25975at 5724.693 kb on - strand, within AO353_25975at 5724.693 kb on - strand, within AO353_25975at 5724.743 kb on + strand, within AO353_25975at 5724.744 kb on - strand, within AO353_25975at 5724.744 kb on - strand, within AO353_25975at 5724.744 kb on - strand, within AO353_25975at 5724.752 kb on + strand, within AO353_25975at 5724.752 kb on + strand, within AO353_25975at 5724.935 kb on + strand, within AO353_25975at 5724.935 kb on + strand, within AO353_25975at 5724.935 kb on + strand, within AO353_25975at 5724.936 kb on - strand, within AO353_25975at 5724.992 kb on + strand, within AO353_25975at 5724.992 kb on + strand, within AO353_25975at 5724.993 kb on - strand, within AO353_25975at 5725.005 kb on + strand, within AO353_25975at 5725.006 kb on - strand, within AO353_25975at 5725.077 kb on - strand, within AO353_25975at 5725.080 kb on + strand, within AO353_25975at 5725.080 kb on + strandat 5725.080 kb on + strand, within AO353_25975at 5725.080 kb on + strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.124 kb on + strand, within AO353_25975at 5725.124 kb on + strand, within AO353_25975at 5725.125 kb on - strand, within AO353_25975at 5725.142 kb on + strand, within AO353_25975at 5725.142 kb on + strand, within AO353_25975at 5725.143 kb on - strand, within AO353_25975

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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5,722,425 + AO353_25960 0.80 +0.6
5,722,425 + AO353_25960 0.80 -2.3
5,722,426 - AO353_25960 0.80 +0.5
5,722,549 - +0.6
5,722,549 - +3.5
5,722,549 - +1.7
5,722,578 + -0.3
5,722,579 - +0.3
5,722,726 - -0.0
5,722,741 + -1.8
5,722,741 + +1.2
5,722,742 - -0.3
5,722,742 - -0.0
5,722,789 - -1.4
5,722,789 - -0.1
5,722,925 + AO353_25965 0.14 -0.3
5,722,928 - AO353_25965 0.15 +0.8
5,723,000 - AO353_25965 0.37 -0.8
5,723,025 - +0.5
5,723,057 + AO353_25965 0.54 -2.2
5,723,057 + AO353_25965 0.54 +2.5
5,723,058 - AO353_25965 0.54 -0.0
5,723,058 - AO353_25965 0.54 -1.0
5,723,058 - AO353_25965 0.54 -2.0
5,723,058 - AO353_25965 0.54 +1.5
5,723,124 + AO353_25965 0.74 +0.7
5,723,150 + AO353_25965 0.81 -1.2
5,723,150 + AO353_25965 0.81 -0.1
5,723,150 + AO353_25965 0.81 +1.5
5,723,150 + AO353_25965 0.81 +0.5
5,723,150 + AO353_25965 0.81 -1.2
5,723,151 - AO353_25965 0.82 -0.1
5,723,151 - AO353_25965 0.82 -0.2
5,723,226 - -1.2
5,723,226 - -0.3
5,723,269 + -0.7
5,723,269 + -0.9
5,723,269 + +0.9
5,723,269 + -0.1
5,723,270 - -0.3
5,723,270 - -0.3
5,723,368 + AO353_25970 0.14 +0.8
5,723,368 + AO353_25970 0.14 +0.8
5,723,369 - AO353_25970 0.14 -0.1
5,723,375 + AO353_25970 0.15 +1.2
5,723,375 + AO353_25970 0.15 +0.8
5,723,376 - AO353_25970 0.15 -1.7
5,723,446 + AO353_25970 0.21 +0.9
5,723,446 + AO353_25970 0.21 -0.1
5,723,446 + AO353_25970 0.21 -0.7
5,723,446 + AO353_25970 0.21 +0.2
5,723,448 + AO353_25970 0.22 -1.6
5,723,459 + AO353_25970 0.23 +1.2
5,723,459 + AO353_25970 0.23 +0.2
5,723,460 - AO353_25970 0.23 +0.8
5,723,460 - AO353_25970 0.23 -0.1
5,723,460 - AO353_25970 0.23 -0.6
5,723,460 - AO353_25970 0.23 -1.5
5,723,460 - AO353_25970 0.23 -1.0
5,723,520 + AO353_25970 0.28 -0.3
5,723,521 - AO353_25970 0.29 -1.1
5,723,521 - -0.5
5,723,555 + +1.2
5,723,555 + AO353_25970 0.32 +2.8
5,723,555 + AO353_25970 0.32 +2.5
5,723,555 + AO353_25970 0.32 -0.5
5,723,556 - AO353_25970 0.32 +0.5
5,723,556 - AO353_25970 0.32 +0.9
5,723,638 + AO353_25970 0.40 -1.8
5,723,639 - AO353_25970 0.40 -0.8
5,723,639 - AO353_25970 0.40 -0.2
5,723,795 + AO353_25970 0.55 -0.7
5,723,850 + AO353_25970 0.60 +0.4
5,723,850 + +0.9
5,724,001 - AO353_25970 0.75 -2.0
5,724,018 + AO353_25970 0.76 +0.3
5,724,019 - AO353_25970 0.76 -0.3
5,724,019 - AO353_25970 0.76 -0.9
5,724,019 - AO353_25970 0.76 -0.2
5,724,219 + +0.8
5,724,219 + -1.0
5,724,219 + -0.0
5,724,220 - +0.3
5,724,220 - -0.3
5,724,220 - +1.6
5,724,223 - -0.1
5,724,231 - -2.1
5,724,314 + -0.1
5,724,315 - +0.1
5,724,329 + -1.6
5,724,329 + -0.6
5,724,329 + +0.2
5,724,329 + -0.7
5,724,329 + +0.5
5,724,329 + +0.2
5,724,330 - -1.2
5,724,330 - -1.5
5,724,330 - +0.2
5,724,339 + -0.1
5,724,422 - -1.3
5,724,431 + +1.5
5,724,431 + +0.7
5,724,431 + -0.8
5,724,431 + -1.4
5,724,431 + -0.6
5,724,432 - -0.4
5,724,432 - -1.3
5,724,449 + -0.0
5,724,449 + -0.5
5,724,450 - -0.0
5,724,450 - +1.6
5,724,450 - -1.2
5,724,450 - -0.4
5,724,540 - AO353_25975 0.11 +1.0
5,724,662 + AO353_25975 0.19 +0.2
5,724,662 + AO353_25975 0.19 -0.4
5,724,662 + AO353_25975 0.19 -0.9
5,724,662 + AO353_25975 0.19 +0.5
5,724,662 + AO353_25975 0.19 +0.3
5,724,662 + AO353_25975 0.19 +0.8
5,724,662 + AO353_25975 0.19 +0.8
5,724,663 - AO353_25975 0.19 +0.7
5,724,663 - AO353_25975 0.19 +1.3
5,724,663 - AO353_25975 0.19 +1.5
5,724,663 - AO353_25975 0.19 +0.1
5,724,693 - AO353_25975 0.21 -0.1
5,724,693 - AO353_25975 0.21 +1.5
5,724,693 - AO353_25975 0.21 -1.8
5,724,693 - AO353_25975 0.21 +0.4
5,724,743 + AO353_25975 0.24 -0.9
5,724,744 - AO353_25975 0.24 -1.1
5,724,744 - AO353_25975 0.24 -1.5
5,724,744 - AO353_25975 0.24 +0.5
5,724,752 + AO353_25975 0.24 +0.9
5,724,752 + AO353_25975 0.24 +0.3
5,724,935 + AO353_25975 0.36 -0.7
5,724,935 + AO353_25975 0.36 -0.3
5,724,935 + AO353_25975 0.36 +0.5
5,724,936 - AO353_25975 0.36 +0.7
5,724,992 + AO353_25975 0.39 +2.9
5,724,992 + AO353_25975 0.39 -0.3
5,724,993 - AO353_25975 0.39 -1.8
5,725,005 + AO353_25975 0.40 -0.6
5,725,006 - AO353_25975 0.40 +0.4
5,725,077 - AO353_25975 0.45 +0.7
5,725,080 + AO353_25975 0.45 -1.1
5,725,080 + +0.9
5,725,080 + AO353_25975 0.45 -0.5
5,725,080 + AO353_25975 0.45 -0.2
5,725,081 - AO353_25975 0.45 -1.2
5,725,081 - AO353_25975 0.45 +0.6
5,725,081 - AO353_25975 0.45 -0.8
5,725,081 - AO353_25975 0.45 -1.4
5,725,081 - AO353_25975 0.45 +0.0
5,725,081 - AO353_25975 0.45 -0.3
5,725,081 - AO353_25975 0.45 +0.0
5,725,124 + AO353_25975 0.48 +0.3
5,725,124 + AO353_25975 0.48 +2.0
5,725,125 - AO353_25975 0.48 -0.8
5,725,142 + AO353_25975 0.49 -0.4
5,725,142 + AO353_25975 0.49 -1.4
5,725,143 - AO353_25975 0.49 -1.4

Or see this region's nucleotide sequence