Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25440 and AO353_25445 are separated by 114 nucleotides AO353_25445 and AO353_25450 are separated by 34 nucleotides AO353_25450 and AO353_25455 are separated by 109 nucleotides AO353_25455 and AO353_25460 are separated by 70 nucleotides
AO353_25440: AO353_25440 - amidase, at 5,608,677 to 5,610,128
_25440
AO353_25445: AO353_25445 - carbonic anhydrase, at 5,610,243 to 5,610,905
_25445
AO353_25450: AO353_25450 - cyanate hydratase, at 5,610,940 to 5,611,410
_25450
AO353_25455: AO353_25455 - hypothetical protein, at 5,611,520 to 5,611,711
_25455
AO353_25460: AO353_25460 - RNA signal recognition particle 4.5S RNA, at 5,611,782 to 5,612,135
_25460
Position (kb)
5610
5611 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5609.523 kb on - strand, within AO353_25440 at 5609.810 kb on + strand, within AO353_25440 at 5609.832 kb on + strand, within AO353_25440 at 5609.832 kb on + strand, within AO353_25440 at 5609.833 kb on - strand, within AO353_25440 at 5609.919 kb on + strand, within AO353_25440 at 5609.919 kb on + strand, within AO353_25440 at 5609.919 kb on + strand, within AO353_25440 at 5609.919 kb on + strand, within AO353_25440 at 5609.919 kb on + strand, within AO353_25440 at 5609.919 kb on + strand, within AO353_25440 at 5609.920 kb on - strand, within AO353_25440 at 5609.920 kb on - strand, within AO353_25440 at 5609.980 kb on + strand, within AO353_25440 at 5609.980 kb on + strand, within AO353_25440 at 5609.980 kb on + strand, within AO353_25440 at 5609.980 kb on + strand, within AO353_25440 at 5609.980 kb on + strand, within AO353_25440 at 5609.980 kb on + strand, within AO353_25440 at 5609.981 kb on - strand, within AO353_25440 at 5609.981 kb on - strand, within AO353_25440 at 5609.981 kb on - strand, within AO353_25440 at 5609.981 kb on - strand, within AO353_25440 at 5609.981 kb on - strand, within AO353_25440 at 5609.981 kb on - strand, within AO353_25440 at 5609.986 kb on + strand at 5609.986 kb on + strand at 5609.987 kb on - strand at 5609.994 kb on - strand at 5610.075 kb on + strand at 5610.076 kb on - strand at 5610.121 kb on + strand at 5610.122 kb on - strand at 5610.122 kb on - strand at 5610.122 kb on - strand at 5610.122 kb on - strand at 5610.126 kb on + strand at 5610.126 kb on + strand at 5610.127 kb on - strand at 5610.144 kb on + strand at 5610.146 kb on + strand at 5610.159 kb on + strand at 5610.169 kb on - strand at 5610.191 kb on + strand at 5610.191 kb on + strand at 5610.191 kb on + strand at 5610.192 kb on - strand at 5610.192 kb on - strand at 5610.192 kb on - strand at 5610.192 kb on - strand at 5610.234 kb on + strand at 5610.234 kb on + strand at 5610.235 kb on - strand at 5610.235 kb on - strand at 5610.338 kb on + strand, within AO353_25445 at 5610.338 kb on + strand, within AO353_25445 at 5610.338 kb on + strand, within AO353_25445 at 5610.339 kb on - strand, within AO353_25445 at 5610.339 kb on - strand, within AO353_25445 at 5610.339 kb on - strand, within AO353_25445 at 5610.520 kb on + strand, within AO353_25445 at 5610.520 kb on + strand, within AO353_25445 at 5610.520 kb on + strand, within AO353_25445 at 5610.521 kb on - strand, within AO353_25445 at 5610.521 kb on - strand, within AO353_25445 at 5610.616 kb on - strand, within AO353_25445 at 5610.787 kb on - strand, within AO353_25445 at 5610.958 kb on + strand at 5610.959 kb on - strand at 5610.959 kb on - strand at 5611.064 kb on - strand, within AO353_25450 at 5611.064 kb on - strand, within AO353_25450 at 5611.064 kb on - strand, within AO353_25450 at 5611.222 kb on + strand, within AO353_25450 at 5611.223 kb on - strand, within AO353_25450 at 5611.223 kb on - strand, within AO353_25450 at 5611.396 kb on + strand at 5611.396 kb on + strand at 5611.396 kb on + strand at 5611.397 kb on - strand at 5611.397 kb on - strand at 5611.408 kb on + strand at 5611.408 kb on + strand at 5611.409 kb on - strand at 5611.433 kb on + strand at 5611.486 kb on - strand at 5611.486 kb on - strand at 5611.486 kb on - strand at 5611.487 kb on + strand at 5611.487 kb on + strand at 5611.487 kb on + strand at 5611.488 kb on - strand at 5611.488 kb on - strand at 5611.488 kb on - strand at 5611.488 kb on - strand at 5611.506 kb on + strand at 5611.506 kb on + strand at 5611.506 kb on + strand at 5611.507 kb on - strand at 5611.507 kb on - strand at 5611.507 kb on - strand at 5611.507 kb on - strand at 5611.613 kb on + strand at 5611.613 kb on + strand, within AO353_25455 at 5611.613 kb on + strand, within AO353_25455 at 5611.614 kb on - strand, within AO353_25455 at 5611.614 kb on - strand, within AO353_25455 at 5611.778 kb on + strand at 5611.778 kb on + strand at 5611.778 kb on + strand at 5611.779 kb on - strand at 5611.779 kb on - strand at 5611.779 kb on - strand at 5611.779 kb on - strand at 5611.779 kb on - strand at 5611.779 kb on - strand at 5611.779 kb on - strand at 5611.779 kb on - strand at 5611.779 kb on - strand at 5611.791 kb on + strand at 5611.791 kb on + strand at 5611.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 5,609,523 - AO353_25440 0.58 -1.7 5,609,810 + AO353_25440 0.78 +1.3 5,609,832 + AO353_25440 0.80 -0.9 5,609,832 + AO353_25440 0.80 +1.0 5,609,833 - AO353_25440 0.80 -0.1 5,609,919 + AO353_25440 0.86 +0.8 5,609,919 + AO353_25440 0.86 +0.3 5,609,919 + AO353_25440 0.86 +0.9 5,609,919 + AO353_25440 0.86 -1.0 5,609,919 + AO353_25440 0.86 +0.3 5,609,919 + AO353_25440 0.86 -1.0 5,609,920 - AO353_25440 0.86 -0.4 5,609,920 - AO353_25440 0.86 -0.6 5,609,980 + AO353_25440 0.90 +1.4 5,609,980 + AO353_25440 0.90 +0.0 5,609,980 + AO353_25440 0.90 +0.4 5,609,980 + AO353_25440 0.90 -0.4 5,609,980 + AO353_25440 0.90 -0.4 5,609,980 + AO353_25440 0.90 -0.9 5,609,981 - AO353_25440 0.90 +0.3 5,609,981 - AO353_25440 0.90 -0.0 5,609,981 - AO353_25440 0.90 -0.0 5,609,981 - AO353_25440 0.90 +2.1 5,609,981 - AO353_25440 0.90 -0.5 5,609,981 - AO353_25440 0.90 +0.0 5,609,986 + -1.1 5,609,986 + +0.4 5,609,987 - +0.4 5,609,994 - +1.0 5,610,075 + -0.0 5,610,076 - -0.4 5,610,121 + -0.1 5,610,122 - +1.0 5,610,122 - -0.3 5,610,122 - +0.0 5,610,122 - +1.0 5,610,126 + +1.4 5,610,126 + +0.9 5,610,127 - -0.6 5,610,144 + -0.3 5,610,146 + -1.6 5,610,159 + +0.4 5,610,169 - -0.4 5,610,191 + -0.4 5,610,191 + +0.1 5,610,191 + +0.2 5,610,192 - +0.3 5,610,192 - -1.9 5,610,192 - -1.4 5,610,192 - -0.4 5,610,234 + -2.1 5,610,234 + +0.7 5,610,235 - -0.7 5,610,235 - +0.7 5,610,338 + AO353_25445 0.14 +0.4 5,610,338 + AO353_25445 0.14 +0.6 5,610,338 + AO353_25445 0.14 -1.0 5,610,339 - AO353_25445 0.14 -1.1 5,610,339 - AO353_25445 0.14 -1.3 5,610,339 - AO353_25445 0.14 +1.6 5,610,520 + AO353_25445 0.42 -0.4 5,610,520 + AO353_25445 0.42 -0.9 5,610,520 + AO353_25445 0.42 +0.1 5,610,521 - AO353_25445 0.42 -0.6 5,610,521 - AO353_25445 0.42 +0.7 5,610,616 - AO353_25445 0.56 -0.4 5,610,787 - AO353_25445 0.82 -0.9 5,610,958 + +1.0 5,610,959 - -0.8 5,610,959 - -0.7 5,611,064 - AO353_25450 0.26 +0.1 5,611,064 - AO353_25450 0.26 +2.9 5,611,064 - AO353_25450 0.26 -0.6 5,611,222 + AO353_25450 0.60 -1.1 5,611,223 - AO353_25450 0.60 -1.9 5,611,223 - AO353_25450 0.60 +0.6 5,611,396 + -0.3 5,611,396 + -0.7 5,611,396 + -0.6 5,611,397 - -1.1 5,611,397 - -0.1 5,611,408 + +0.4 5,611,408 + +0.8 5,611,409 - -1.7 5,611,433 + -0.3 5,611,486 - +0.3 5,611,486 - -1.0 5,611,486 - +0.4 5,611,487 + +0.3 5,611,487 + +0.3 5,611,487 + +0.6 5,611,488 - -1.5 5,611,488 - -1.9 5,611,488 - -0.5 5,611,488 - -0.5 5,611,506 + +0.7 5,611,506 + -0.0 5,611,506 + -0.1 5,611,507 - -0.1 5,611,507 - -0.1 5,611,507 - -2.0 5,611,507 - +0.8 5,611,613 + +2.4 5,611,613 + AO353_25455 0.48 -0.1 5,611,613 + AO353_25455 0.48 -0.9 5,611,614 - AO353_25455 0.49 +0.1 5,611,614 - AO353_25455 0.49 -1.6 5,611,778 + -0.4 5,611,778 + -2.5 5,611,778 + -0.4 5,611,779 - -0.1 5,611,779 - -0.7 5,611,779 - -0.4 5,611,779 - +0.9 5,611,779 - -2.2 5,611,779 - -0.7 5,611,779 - +0.9 5,611,779 - +0.1 5,611,779 - -0.7 5,611,791 + +0.7 5,611,791 + -0.1 5,611,792 - -0.4
Or see this region's nucleotide sequence