Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23090 and AO353_23095 are separated by 176 nucleotides AO353_23095 and AO353_23100 are separated by 77 nucleotides AO353_23100 and AO353_23105 are separated by 70 nucleotides
AO353_23090: AO353_23090 - LysR family transcriptional regulator, at 5,068,112 to 5,069,005
_23090
AO353_23095: AO353_23095 - hydrolase, at 5,069,182 to 5,069,826
_23095
AO353_23100: AO353_23100 - antibiotic biosynthesis monooxygenase, at 5,069,904 to 5,070,479
_23100
AO353_23105: AO353_23105 - dienelactone hydrolase, at 5,070,550 to 5,071,437
_23105
Position (kb)
5069
5070
5071 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5069.072 kb on + strand at 5069.072 kb on + strand at 5069.077 kb on + strand at 5069.078 kb on - strand at 5069.078 kb on - strand at 5069.078 kb on - strand at 5069.078 kb on - strand at 5069.078 kb on - strand at 5069.078 kb on - strand at 5069.078 kb on - strand at 5069.078 kb on - strand at 5069.132 kb on - strand at 5069.132 kb on - strand at 5069.149 kb on + strand at 5069.150 kb on - strand at 5069.150 kb on - strand at 5069.150 kb on - strand at 5069.187 kb on + strand at 5069.187 kb on + strand at 5069.188 kb on - strand at 5069.188 kb on - strand at 5069.188 kb on - strand at 5069.188 kb on - strand at 5069.377 kb on + strand, within AO353_23095 at 5069.377 kb on + strand, within AO353_23095 at 5069.377 kb on + strand, within AO353_23095 at 5069.377 kb on + strand, within AO353_23095 at 5069.397 kb on + strand, within AO353_23095 at 5069.398 kb on - strand, within AO353_23095 at 5069.398 kb on - strand, within AO353_23095 at 5069.455 kb on - strand, within AO353_23095 at 5069.455 kb on - strand, within AO353_23095 at 5069.465 kb on + strand, within AO353_23095 at 5069.465 kb on + strand, within AO353_23095 at 5069.575 kb on + strand, within AO353_23095 at 5069.575 kb on + strand, within AO353_23095 at 5069.575 kb on + strand, within AO353_23095 at 5069.575 kb on + strand, within AO353_23095 at 5069.575 kb on + strand, within AO353_23095 at 5069.575 kb on + strand, within AO353_23095 at 5069.575 kb on + strand, within AO353_23095 at 5069.575 kb on + strand, within AO353_23095 at 5069.575 kb on + strand, within AO353_23095 at 5069.575 kb on + strand, within AO353_23095 at 5069.575 kb on + strand, within AO353_23095 at 5069.575 kb on + strand, within AO353_23095 at 5069.576 kb on - strand, within AO353_23095 at 5069.576 kb on - strand, within AO353_23095 at 5069.576 kb on - strand, within AO353_23095 at 5069.576 kb on - strand, within AO353_23095 at 5069.689 kb on + strand, within AO353_23095 at 5069.690 kb on - strand, within AO353_23095 at 5069.719 kb on + strand, within AO353_23095 at 5069.719 kb on + strand, within AO353_23095 at 5069.719 kb on + strand, within AO353_23095 at 5069.720 kb on - strand, within AO353_23095 at 5069.720 kb on - strand, within AO353_23095 at 5069.720 kb on - strand, within AO353_23095 at 5069.720 kb on - strand, within AO353_23095 at 5069.720 kb on - strand, within AO353_23095 at 5069.720 kb on - strand, within AO353_23095 at 5069.780 kb on - strand at 5069.785 kb on + strand at 5069.786 kb on - strand at 5069.786 kb on - strand at 5069.839 kb on - strand at 5069.979 kb on + strand, within AO353_23100 at 5069.979 kb on + strand, within AO353_23100 at 5069.980 kb on - strand, within AO353_23100 at 5070.022 kb on - strand at 5070.022 kb on - strand, within AO353_23100 at 5070.154 kb on + strand, within AO353_23100 at 5070.154 kb on + strand, within AO353_23100 at 5070.154 kb on + strand, within AO353_23100 at 5070.154 kb on + strand, within AO353_23100 at 5070.155 kb on - strand, within AO353_23100 at 5070.224 kb on + strand, within AO353_23100 at 5070.224 kb on + strand, within AO353_23100 at 5070.225 kb on - strand, within AO353_23100 at 5070.363 kb on + strand, within AO353_23100 at 5070.363 kb on + strand, within AO353_23100 at 5070.414 kb on + strand, within AO353_23100 at 5070.415 kb on - strand at 5070.415 kb on - strand, within AO353_23100 at 5070.415 kb on - strand, within AO353_23100 at 5070.415 kb on - strand, within AO353_23100 at 5070.415 kb on - strand, within AO353_23100 at 5070.415 kb on - strand, within AO353_23100 at 5070.551 kb on + strand at 5070.662 kb on + strand, within AO353_23105 at 5070.668 kb on + strand, within AO353_23105 at 5070.668 kb on + strand, within AO353_23105 at 5070.668 kb on + strand, within AO353_23105 at 5070.669 kb on - strand, within AO353_23105 at 5070.669 kb on - strand, within AO353_23105 at 5070.669 kb on - strand, within AO353_23105 at 5070.669 kb on - strand, within AO353_23105 at 5070.669 kb on - strand, within AO353_23105 at 5070.669 kb on - strand, within AO353_23105 at 5070.677 kb on + strand, within AO353_23105 at 5070.677 kb on + strand, within AO353_23105 at 5070.753 kb on - strand, within AO353_23105 at 5070.753 kb on - strand, within AO353_23105 at 5070.760 kb on + strand, within AO353_23105 at 5070.760 kb on + strand, within AO353_23105 at 5070.761 kb on - strand, within AO353_23105 at 5070.761 kb on - strand, within AO353_23105 at 5070.812 kb on + strand, within AO353_23105 at 5070.812 kb on + strand, within AO353_23105 at 5070.813 kb on - strand, within AO353_23105 at 5070.813 kb on - strand, within AO353_23105 at 5070.813 kb on - strand at 5070.878 kb on + strand, within AO353_23105 at 5071.101 kb on - strand, within AO353_23105 at 5071.214 kb on + strand, within AO353_23105 at 5071.214 kb on + strand, within AO353_23105 at 5071.224 kb on - strand, within AO353_23105 at 5071.274 kb on + strand, within AO353_23105 at 5071.274 kb on + strand, within AO353_23105 at 5071.274 kb on + strand, within AO353_23105 at 5071.274 kb on + strand, within AO353_23105 at 5071.275 kb on - strand, within AO353_23105 at 5071.275 kb on - strand, within AO353_23105 at 5071.322 kb on - strand, within AO353_23105 at 5071.322 kb on - strand, within AO353_23105 at 5071.379 kb on + strand at 5071.379 kb on + strand at 5071.380 kb on - strand at 5071.380 kb on - strand at 5071.382 kb on + strand at 5071.382 kb on + strand at 5071.382 kb on + strand at 5071.382 kb on + strand at 5071.383 kb on - strand at 5071.383 kb on - strand at 5071.425 kb on + strand at 5071.425 kb on + strand at 5071.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 5,069,072 + -0.2 5,069,072 + +0.9 5,069,077 + -0.4 5,069,078 - +0.1 5,069,078 - +2.5 5,069,078 - -0.8 5,069,078 - -0.4 5,069,078 - +1.2 5,069,078 - -0.7 5,069,078 - -0.9 5,069,078 - +0.9 5,069,132 - +0.2 5,069,132 - -0.1 5,069,149 + -0.3 5,069,150 - -0.4 5,069,150 - -0.5 5,069,150 - +0.6 5,069,187 + +0.6 5,069,187 + +0.7 5,069,188 - +0.8 5,069,188 - +0.2 5,069,188 - +0.5 5,069,188 - -1.6 5,069,377 + AO353_23095 0.30 +2.0 5,069,377 + AO353_23095 0.30 -0.6 5,069,377 + AO353_23095 0.30 +0.1 5,069,377 + AO353_23095 0.30 +0.5 5,069,397 + AO353_23095 0.33 -0.8 5,069,398 - AO353_23095 0.33 -1.8 5,069,398 - AO353_23095 0.33 -0.1 5,069,455 - AO353_23095 0.42 +0.3 5,069,455 - AO353_23095 0.42 +1.3 5,069,465 + AO353_23095 0.44 -3.4 5,069,465 + AO353_23095 0.44 -0.4 5,069,575 + AO353_23095 0.61 +0.6 5,069,575 + AO353_23095 0.61 -0.3 5,069,575 + AO353_23095 0.61 -0.6 5,069,575 + AO353_23095 0.61 -1.0 5,069,575 + AO353_23095 0.61 -0.9 5,069,575 + AO353_23095 0.61 +0.8 5,069,575 + AO353_23095 0.61 -1.1 5,069,575 + AO353_23095 0.61 +0.3 5,069,575 + AO353_23095 0.61 -0.3 5,069,575 + AO353_23095 0.61 -0.3 5,069,575 + AO353_23095 0.61 +1.5 5,069,575 + AO353_23095 0.61 +0.2 5,069,576 - AO353_23095 0.61 +0.4 5,069,576 - AO353_23095 0.61 +0.7 5,069,576 - AO353_23095 0.61 -1.2 5,069,576 - AO353_23095 0.61 +2.1 5,069,689 + AO353_23095 0.79 -0.5 5,069,690 - AO353_23095 0.79 -2.3 5,069,719 + AO353_23095 0.83 -0.4 5,069,719 + AO353_23095 0.83 +1.1 5,069,719 + AO353_23095 0.83 +0.4 5,069,720 - AO353_23095 0.83 +0.7 5,069,720 - AO353_23095 0.83 +1.5 5,069,720 - AO353_23095 0.83 -1.5 5,069,720 - AO353_23095 0.83 -1.5 5,069,720 - AO353_23095 0.83 -0.1 5,069,720 - AO353_23095 0.83 +3.1 5,069,780 - -1.2 5,069,785 + -0.5 5,069,786 - -1.0 5,069,786 - +1.4 5,069,839 - +0.1 5,069,979 + AO353_23100 0.13 -0.5 5,069,979 + AO353_23100 0.13 -0.8 5,069,980 - AO353_23100 0.13 -0.8 5,070,022 - +0.9 5,070,022 - AO353_23100 0.20 -0.1 5,070,154 + AO353_23100 0.43 +0.7 5,070,154 + AO353_23100 0.43 +0.2 5,070,154 + AO353_23100 0.43 -0.6 5,070,154 + AO353_23100 0.43 +0.2 5,070,155 - AO353_23100 0.44 -0.9 5,070,224 + AO353_23100 0.56 -1.1 5,070,224 + AO353_23100 0.56 -1.1 5,070,225 - AO353_23100 0.56 -0.7 5,070,363 + AO353_23100 0.80 -0.3 5,070,363 + AO353_23100 0.80 -1.6 5,070,414 + AO353_23100 0.89 -0.7 5,070,415 - +2.5 5,070,415 - AO353_23100 0.89 -1.8 5,070,415 - AO353_23100 0.89 -1.6 5,070,415 - AO353_23100 0.89 -1.4 5,070,415 - AO353_23100 0.89 +0.2 5,070,415 - AO353_23100 0.89 -0.9 5,070,551 + +0.3 5,070,662 + AO353_23105 0.13 -1.4 5,070,668 + AO353_23105 0.13 -0.7 5,070,668 + AO353_23105 0.13 +0.9 5,070,668 + AO353_23105 0.13 -1.0 5,070,669 - AO353_23105 0.13 +0.6 5,070,669 - AO353_23105 0.13 +0.2 5,070,669 - AO353_23105 0.13 -0.8 5,070,669 - AO353_23105 0.13 +0.1 5,070,669 - AO353_23105 0.13 +0.4 5,070,669 - AO353_23105 0.13 -1.5 5,070,677 + AO353_23105 0.14 +0.9 5,070,677 + AO353_23105 0.14 -0.6 5,070,753 - AO353_23105 0.23 +0.4 5,070,753 - AO353_23105 0.23 -0.2 5,070,760 + AO353_23105 0.24 +0.7 5,070,760 + AO353_23105 0.24 +0.2 5,070,761 - AO353_23105 0.24 -0.8 5,070,761 - AO353_23105 0.24 -2.4 5,070,812 + AO353_23105 0.30 -1.0 5,070,812 + AO353_23105 0.30 +1.1 5,070,813 - AO353_23105 0.30 -0.6 5,070,813 - AO353_23105 0.30 +0.9 5,070,813 - -0.3 5,070,878 + AO353_23105 0.37 +0.7 5,071,101 - AO353_23105 0.62 +0.2 5,071,214 + AO353_23105 0.75 +0.9 5,071,214 + AO353_23105 0.75 -0.7 5,071,224 - AO353_23105 0.76 +0.7 5,071,274 + AO353_23105 0.82 +0.9 5,071,274 + AO353_23105 0.82 +0.0 5,071,274 + AO353_23105 0.82 -0.8 5,071,274 + AO353_23105 0.82 +0.9 5,071,275 - AO353_23105 0.82 -0.5 5,071,275 - AO353_23105 0.82 -0.0 5,071,322 - AO353_23105 0.87 -1.0 5,071,322 - AO353_23105 0.87 -0.4 5,071,379 + -0.1 5,071,379 + -1.9 5,071,380 - -0.9 5,071,380 - -2.0 5,071,382 + +0.2 5,071,382 + -1.1 5,071,382 + -1.8 5,071,382 + -0.3 5,071,383 - -0.3 5,071,383 - +0.2 5,071,425 + -0.2 5,071,425 + -0.8 5,071,426 - -0.6
Or see this region's nucleotide sequence