Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22910 and AO353_22915 are separated by 216 nucleotides AO353_22915 and AO353_22920 overlap by 4 nucleotides AO353_22920 and AO353_22925 are separated by 190 nucleotides
AO353_22910: AO353_22910 - histidine kinase, at 5,026,746 to 5,028,827
_22910
AO353_22915: AO353_22915 - oxidoreductase, at 5,029,044 to 5,029,790
_22915
AO353_22920: AO353_22920 - GntR family transcriptional regulator, at 5,029,787 to 5,031,196
_22920
AO353_22925: AO353_22925 - (Fe-S)-binding protein, at 5,031,387 to 5,032,799
_22925
Position (kb) 5029
5030
5031
5032 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5028.796 kb on + strand at 5028.796 kb on + strand at 5028.796 kb on + strand at 5028.796 kb on + strand at 5028.797 kb on - strand at 5028.797 kb on - strand at 5028.797 kb on - strand at 5028.797 kb on - strand at 5028.797 kb on - strand at 5028.797 kb on - strand at 5029.000 kb on - strand at 5029.094 kb on + strand at 5029.094 kb on + strand at 5029.094 kb on + strand at 5029.095 kb on - strand at 5029.095 kb on - strand at 5029.095 kb on - strand at 5029.140 kb on + strand, within AO353_22915 at 5029.141 kb on - strand, within AO353_22915 at 5029.503 kb on + strand, within AO353_22915 at 5029.503 kb on + strand, within AO353_22915 at 5029.504 kb on - strand, within AO353_22915 at 5029.504 kb on - strand, within AO353_22915 at 5029.614 kb on + strand, within AO353_22915 at 5029.614 kb on + strand, within AO353_22915 at 5029.614 kb on + strand, within AO353_22915 at 5029.614 kb on + strand, within AO353_22915 at 5029.615 kb on - strand at 5029.615 kb on - strand, within AO353_22915 at 5029.615 kb on - strand, within AO353_22915 at 5029.615 kb on - strand, within AO353_22915 at 5029.615 kb on - strand, within AO353_22915 at 5029.615 kb on - strand, within AO353_22915 at 5029.722 kb on - strand at 5029.749 kb on + strand at 5029.749 kb on + strand at 5029.750 kb on - strand at 5029.788 kb on + strand at 5029.811 kb on + strand at 5029.857 kb on + strand at 5029.857 kb on + strand at 5029.857 kb on + strand at 5029.858 kb on - strand at 5029.870 kb on + strand at 5029.995 kb on + strand, within AO353_22920 at 5029.996 kb on - strand, within AO353_22920 at 5030.038 kb on - strand, within AO353_22920 at 5030.334 kb on + strand at 5030.335 kb on - strand, within AO353_22920 at 5030.335 kb on - strand, within AO353_22920 at 5030.335 kb on - strand, within AO353_22920 at 5030.335 kb on - strand, within AO353_22920 at 5030.586 kb on + strand, within AO353_22920 at 5030.586 kb on + strand, within AO353_22920 at 5030.586 kb on + strand, within AO353_22920 at 5030.587 kb on - strand at 5030.587 kb on - strand, within AO353_22920 at 5030.587 kb on - strand, within AO353_22920 at 5030.718 kb on + strand, within AO353_22920 at 5030.718 kb on + strand at 5030.719 kb on - strand, within AO353_22920 at 5030.719 kb on - strand, within AO353_22920 at 5031.007 kb on - strand, within AO353_22920 at 5031.054 kb on + strand, within AO353_22920 at 5031.054 kb on + strand, within AO353_22920 at 5031.055 kb on - strand, within AO353_22920 at 5031.055 kb on - strand, within AO353_22920 at 5031.055 kb on - strand, within AO353_22920 at 5031.055 kb on - strand, within AO353_22920 at 5031.057 kb on + strand at 5031.057 kb on + strand at 5031.057 kb on + strand at 5031.091 kb on - strand at 5031.198 kb on + strand at 5031.198 kb on + strand at 5031.198 kb on + strand at 5031.198 kb on + strand at 5031.199 kb on - strand at 5031.299 kb on - strand at 5031.299 kb on - strand at 5031.649 kb on + strand, within AO353_22925 at 5031.650 kb on - strand, within AO353_22925 at 5031.650 kb on - strand, within AO353_22925 at 5031.650 kb on - strand, within AO353_22925 at 5031.650 kb on - strand, within AO353_22925 at 5031.844 kb on + strand, within AO353_22925 at 5031.844 kb on + strand, within AO353_22925 at 5031.845 kb on - strand, within AO353_22925 at 5031.845 kb on - strand, within AO353_22925 at 5031.845 kb on - strand, within AO353_22925 at 5031.845 kb on - strand, within AO353_22925 at 5031.903 kb on - strand, within AO353_22925 at 5031.903 kb on - strand, within AO353_22925 at 5031.903 kb on - strand, within AO353_22925 at 5031.903 kb on - strand, within AO353_22925 at 5031.903 kb on - strand, within AO353_22925 at 5031.903 kb on - strand, within AO353_22925 at 5032.120 kb on + strand, within AO353_22925 at 5032.121 kb on - strand, within AO353_22925 at 5032.121 kb on - strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.172 kb on - strand, within AO353_22925 at 5032.172 kb on - strand, within AO353_22925 at 5032.172 kb on - strand, within AO353_22925
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 5,028,796 + -0.6 5,028,796 + -1.1 5,028,796 + +0.7 5,028,796 + -1.5 5,028,797 - -0.5 5,028,797 - -0.4 5,028,797 - -0.7 5,028,797 - -0.5 5,028,797 - -0.1 5,028,797 - +0.0 5,029,000 - -1.3 5,029,094 + -0.6 5,029,094 + +0.1 5,029,094 + -2.0 5,029,095 - +1.0 5,029,095 - -0.3 5,029,095 - -1.4 5,029,140 + AO353_22915 0.13 +0.9 5,029,141 - AO353_22915 0.13 +0.4 5,029,503 + AO353_22915 0.61 +2.5 5,029,503 + AO353_22915 0.61 -0.2 5,029,504 - AO353_22915 0.62 +0.2 5,029,504 - AO353_22915 0.62 +1.1 5,029,614 + AO353_22915 0.76 -0.5 5,029,614 + AO353_22915 0.76 -0.2 5,029,614 + AO353_22915 0.76 +0.9 5,029,614 + AO353_22915 0.76 -1.0 5,029,615 - +2.1 5,029,615 - AO353_22915 0.76 -0.3 5,029,615 - AO353_22915 0.76 +1.2 5,029,615 - AO353_22915 0.76 -0.5 5,029,615 - AO353_22915 0.76 -0.7 5,029,615 - AO353_22915 0.76 +0.7 5,029,722 - -0.7 5,029,749 + -1.5 5,029,749 + +0.4 5,029,750 - -0.5 5,029,788 + -1.3 5,029,811 + +0.1 5,029,857 + -0.1 5,029,857 + +0.2 5,029,857 + +0.3 5,029,858 - +1.7 5,029,870 + +0.2 5,029,995 + AO353_22920 0.15 -0.3 5,029,996 - AO353_22920 0.15 +1.8 5,030,038 - AO353_22920 0.18 +1.9 5,030,334 + -0.8 5,030,335 - AO353_22920 0.39 -0.7 5,030,335 - AO353_22920 0.39 -1.5 5,030,335 - AO353_22920 0.39 -1.4 5,030,335 - AO353_22920 0.39 -0.6 5,030,586 + AO353_22920 0.57 -0.4 5,030,586 + AO353_22920 0.57 -0.7 5,030,586 + AO353_22920 0.57 -2.7 5,030,587 - +0.5 5,030,587 - AO353_22920 0.57 +0.4 5,030,587 - AO353_22920 0.57 +1.0 5,030,718 + AO353_22920 0.66 -0.3 5,030,718 + +1.5 5,030,719 - AO353_22920 0.66 -0.1 5,030,719 - AO353_22920 0.66 -0.5 5,031,007 - AO353_22920 0.87 -1.0 5,031,054 + AO353_22920 0.90 -0.1 5,031,054 + AO353_22920 0.90 +0.7 5,031,055 - AO353_22920 0.90 +0.5 5,031,055 - AO353_22920 0.90 +0.5 5,031,055 - AO353_22920 0.90 -1.5 5,031,055 - AO353_22920 0.90 +0.5 5,031,057 + +0.4 5,031,057 + -0.4 5,031,057 + -0.4 5,031,091 - -1.4 5,031,198 + +0.4 5,031,198 + +0.5 5,031,198 + -1.2 5,031,198 + +0.0 5,031,199 - -0.1 5,031,299 - -0.6 5,031,299 - +0.8 5,031,649 + AO353_22925 0.19 -1.1 5,031,650 - AO353_22925 0.19 -0.7 5,031,650 - AO353_22925 0.19 +1.3 5,031,650 - AO353_22925 0.19 +0.5 5,031,650 - AO353_22925 0.19 -0.7 5,031,844 + AO353_22925 0.32 -1.1 5,031,844 + AO353_22925 0.32 +0.4 5,031,845 - AO353_22925 0.32 +1.3 5,031,845 - AO353_22925 0.32 -2.1 5,031,845 - AO353_22925 0.32 -1.8 5,031,845 - AO353_22925 0.32 +0.5 5,031,903 - AO353_22925 0.37 +0.3 5,031,903 - AO353_22925 0.37 -1.6 5,031,903 - AO353_22925 0.37 +0.5 5,031,903 - AO353_22925 0.37 +0.9 5,031,903 - AO353_22925 0.37 +0.4 5,031,903 - AO353_22925 0.37 +2.5 5,032,120 + AO353_22925 0.52 -0.6 5,032,121 - AO353_22925 0.52 -0.8 5,032,121 - AO353_22925 0.52 -1.3 5,032,130 + AO353_22925 0.53 +0.2 5,032,130 + AO353_22925 0.53 -0.2 5,032,130 + AO353_22925 0.53 -1.0 5,032,130 + AO353_22925 0.53 +2.5 5,032,130 + AO353_22925 0.53 +0.5 5,032,130 + AO353_22925 0.53 -0.6 5,032,130 + AO353_22925 0.53 +0.3 5,032,130 + AO353_22925 0.53 +2.0 5,032,130 + AO353_22925 0.53 +0.2 5,032,130 + AO353_22925 0.53 -0.7 5,032,130 + AO353_22925 0.53 -0.5 5,032,130 + AO353_22925 0.53 +1.8 5,032,130 + AO353_22925 0.53 +0.2 5,032,130 + AO353_22925 0.53 -1.9 5,032,130 + AO353_22925 0.53 +1.0 5,032,130 + AO353_22925 0.53 -1.1 5,032,130 + AO353_22925 0.53 -2.0 5,032,130 + AO353_22925 0.53 -1.0 5,032,130 + AO353_22925 0.53 -0.7 5,032,130 + AO353_22925 0.53 -1.5 5,032,130 + AO353_22925 0.53 +0.4 5,032,130 + AO353_22925 0.53 -0.1 5,032,130 + AO353_22925 0.53 +1.9 5,032,130 + AO353_22925 0.53 +0.9 5,032,130 + AO353_22925 0.53 +0.7 5,032,131 - AO353_22925 0.53 -0.3 5,032,131 - AO353_22925 0.53 +1.9 5,032,131 - AO353_22925 0.53 +0.7 5,032,131 - AO353_22925 0.53 -0.3 5,032,131 - AO353_22925 0.53 +0.3 5,032,131 - AO353_22925 0.53 -0.6 5,032,131 - AO353_22925 0.53 -0.5 5,032,131 - AO353_22925 0.53 -0.5 5,032,131 - AO353_22925 0.53 -1.2 5,032,131 - AO353_22925 0.53 -0.1 5,032,131 - AO353_22925 0.53 -0.1 5,032,131 - AO353_22925 0.53 -0.5 5,032,131 - AO353_22925 0.53 -1.0 5,032,131 - AO353_22925 0.53 -0.5 5,032,131 - AO353_22925 0.53 +0.9 5,032,131 - AO353_22925 0.53 +0.3 5,032,131 - AO353_22925 0.53 -1.1 5,032,131 - AO353_22925 0.53 -0.7 5,032,131 - AO353_22925 0.53 +0.3 5,032,131 - AO353_22925 0.53 -0.3 5,032,131 - AO353_22925 0.53 -0.9 5,032,131 - AO353_22925 0.53 -1.1 5,032,131 - AO353_22925 0.53 -0.1 5,032,131 - AO353_22925 0.53 -0.3 5,032,131 - AO353_22925 0.53 -0.0 5,032,131 - AO353_22925 0.53 -1.8 5,032,131 - AO353_22925 0.53 +0.0 5,032,131 - AO353_22925 0.53 +1.8 5,032,172 - AO353_22925 0.56 +1.3 5,032,172 - AO353_22925 0.56 -0.1 5,032,172 - AO353_22925 0.56 +1.3
Or see this region's nucleotide sequence