Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_20865 and AO353_20870 are separated by 293 nucleotides AO353_20870 and AO353_20875 are separated by 386 nucleotides AO353_20875 and AO353_20880 are separated by 17 nucleotides AO353_20880 and AO353_20885 are separated by 60 nucleotides AO353_20885 and AO353_20890 are separated by 29 nucleotides
AO353_20865: AO353_20865 - cold-shock protein, at 4,566,415 to 4,566,627
_20865
AO353_20870: AO353_20870 - hypothetical protein, at 4,566,921 to 4,567,220
_20870
AO353_20875: AO353_20875 - threonine--tRNA ligase, at 4,567,607 to 4,569,529
_20875
AO353_20880: AO353_20880 - translation initiation factor IF-3, at 4,569,547 to 4,570,080
_20880
AO353_20885: AO353_20885 - 50S ribosomal protein L35, at 4,570,141 to 4,570,335
_20885
AO353_20890: AO353_20890 - 50S ribosomal protein L20, at 4,570,365 to 4,570,721
_20890
Position (kb)
4567
4568
4569
4570 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4566.621 kb on + strand at 4566.622 kb on - strand at 4566.632 kb on + strand at 4566.632 kb on + strand at 4566.632 kb on + strand at 4566.632 kb on + strand at 4566.633 kb on - strand at 4566.647 kb on + strand at 4566.647 kb on + strand at 4566.647 kb on + strand at 4566.648 kb on - strand at 4566.649 kb on + strand at 4566.649 kb on + strand at 4566.649 kb on + strand at 4566.650 kb on - strand at 4566.650 kb on - strand at 4566.650 kb on - strand at 4566.650 kb on - strand at 4566.650 kb on - strand at 4566.650 kb on - strand at 4566.696 kb on + strand at 4566.696 kb on + strand at 4566.696 kb on + strand at 4566.697 kb on - strand at 4566.697 kb on - strand at 4566.701 kb on + strand at 4566.702 kb on - strand at 4566.702 kb on - strand at 4566.773 kb on + strand at 4566.773 kb on + strand at 4566.773 kb on + strand at 4566.773 kb on + strand at 4566.773 kb on + strand at 4566.773 kb on + strand at 4566.774 kb on - strand at 4566.774 kb on - strand at 4566.774 kb on - strand at 4566.774 kb on - strand at 4566.774 kb on - strand at 4566.774 kb on - strand at 4566.776 kb on - strand at 4566.815 kb on - strand at 4566.849 kb on - strand at 4566.849 kb on - strand at 4566.849 kb on - strand at 4566.877 kb on + strand at 4566.923 kb on - strand at 4566.923 kb on - strand at 4567.025 kb on + strand, within AO353_20870 at 4567.025 kb on + strand, within AO353_20870 at 4567.025 kb on + strand, within AO353_20870 at 4567.025 kb on + strand, within AO353_20870 at 4567.026 kb on - strand, within AO353_20870 at 4567.026 kb on - strand, within AO353_20870 at 4567.026 kb on - strand, within AO353_20870 at 4567.121 kb on + strand, within AO353_20870 at 4567.121 kb on + strand, within AO353_20870 at 4567.121 kb on + strand, within AO353_20870 at 4567.121 kb on + strand, within AO353_20870 at 4567.121 kb on + strand, within AO353_20870 at 4567.122 kb on - strand, within AO353_20870 at 4567.122 kb on - strand, within AO353_20870 at 4567.122 kb on - strand, within AO353_20870 at 4567.123 kb on + strand, within AO353_20870 at 4567.123 kb on + strand, within AO353_20870 at 4567.123 kb on + strand, within AO353_20870 at 4567.123 kb on + strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.212 kb on - strand at 4567.220 kb on + strand at 4567.220 kb on + strand at 4567.220 kb on + strand at 4567.220 kb on + strand at 4567.220 kb on + strand at 4567.221 kb on - strand at 4567.221 kb on - strand at 4567.221 kb on - strand at 4567.265 kb on + strand at 4567.265 kb on + strand at 4567.266 kb on - strand at 4567.266 kb on - strand at 4567.281 kb on + strand at 4567.281 kb on + strand at 4567.282 kb on - strand at 4567.282 kb on - strand at 4567.282 kb on - strand at 4567.282 kb on - strand at 4567.303 kb on - strand at 4567.501 kb on + strand at 4570.114 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 4,566,621 + -1.6 4,566,622 - +0.4 4,566,632 + -0.8 4,566,632 + -1.5 4,566,632 + -0.0 4,566,632 + -1.6 4,566,633 - -1.3 4,566,647 + +1.5 4,566,647 + -0.6 4,566,647 + -0.0 4,566,648 - -0.2 4,566,649 + +0.2 4,566,649 + -0.5 4,566,649 + +0.2 4,566,650 - +0.4 4,566,650 - +0.7 4,566,650 - -0.5 4,566,650 - -1.3 4,566,650 - -1.6 4,566,650 - -0.8 4,566,696 + +0.9 4,566,696 + +0.5 4,566,696 + +2.0 4,566,697 - -1.9 4,566,697 - -0.1 4,566,701 + +1.5 4,566,702 - -1.0 4,566,702 - +0.3 4,566,773 + -1.1 4,566,773 + -0.6 4,566,773 + +1.5 4,566,773 + -0.8 4,566,773 + +2.1 4,566,773 + -0.9 4,566,774 - +0.4 4,566,774 - -0.5 4,566,774 - -1.1 4,566,774 - -0.7 4,566,774 - -1.1 4,566,774 - -0.1 4,566,776 - -1.1 4,566,815 - +0.4 4,566,849 - +0.1 4,566,849 - +0.7 4,566,849 - +0.5 4,566,877 + +0.8 4,566,923 - +0.0 4,566,923 - +0.4 4,567,025 + AO353_20870 0.35 -0.5 4,567,025 + AO353_20870 0.35 -0.8 4,567,025 + AO353_20870 0.35 +0.3 4,567,025 + AO353_20870 0.35 -1.9 4,567,026 - AO353_20870 0.35 -0.9 4,567,026 - AO353_20870 0.35 -0.8 4,567,026 - AO353_20870 0.35 +0.9 4,567,121 + AO353_20870 0.67 +0.7 4,567,121 + AO353_20870 0.67 +0.2 4,567,121 + AO353_20870 0.67 -0.8 4,567,121 + AO353_20870 0.67 +0.4 4,567,121 + AO353_20870 0.67 +1.3 4,567,122 - AO353_20870 0.67 +0.7 4,567,122 - AO353_20870 0.67 +0.3 4,567,122 - AO353_20870 0.67 -1.1 4,567,123 + AO353_20870 0.67 -0.5 4,567,123 + AO353_20870 0.67 +0.1 4,567,123 + AO353_20870 0.67 -0.9 4,567,123 + AO353_20870 0.67 +0.5 4,567,124 - AO353_20870 0.68 -2.3 4,567,124 - AO353_20870 0.68 +0.4 4,567,124 - AO353_20870 0.68 +1.1 4,567,124 - AO353_20870 0.68 +1.1 4,567,124 - AO353_20870 0.68 +0.1 4,567,124 - AO353_20870 0.68 -1.0 4,567,124 - AO353_20870 0.68 -0.0 4,567,124 - AO353_20870 0.68 -0.5 4,567,212 - +1.7 4,567,220 + +0.5 4,567,220 + -1.4 4,567,220 + -0.1 4,567,220 + -0.4 4,567,220 + +0.4 4,567,221 - -0.8 4,567,221 - -0.3 4,567,221 - -1.3 4,567,265 + +0.5 4,567,265 + -0.4 4,567,266 - -0.4 4,567,266 - +0.4 4,567,281 + -1.2 4,567,281 + +0.5 4,567,282 - +1.1 4,567,282 - +0.6 4,567,282 - +1.5 4,567,282 - +1.5 4,567,303 - -0.5 4,567,501 + -1.5 4,570,114 + -0.6
Or see this region's nucleotide sequence