Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12380

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12370 and AO353_12375 overlap by 4 nucleotidesAO353_12375 and AO353_12380 overlap by 1 nucleotidesAO353_12380 and AO353_12385 are separated by 155 nucleotidesAO353_12385 and AO353_12390 are separated by 218 nucleotides AO353_12370: AO353_12370 - ubiquinone biosynthesis protein UbiB, at 2,720,692 to 2,722,296 _12370 AO353_12375: AO353_12375 - sterol-binding protein, at 2,722,293 to 2,722,916 _12375 AO353_12380: AO353_12380 - ubiquinone biosynthesis methyltransferase UbiE, at 2,722,916 to 2,723,686 _12380 AO353_12385: AO353_12385 - polyhydroxyalkanoic acid system protein, at 2,723,842 to 2,724,117 _12385 AO353_12390: AO353_12390 - poly(3-hydroxyalkanoate) granule-associated protein PhaI, at 2,724,336 to 2,724,758 _12390 Position (kb) 2722 2723 2724Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2722.559 kb on - strand, within AO353_12375at 2723.721 kb on - strandat 2723.721 kb on - strandat 2723.721 kb on - strandat 2723.721 kb on - strandat 2723.759 kb on + strandat 2723.759 kb on + strandat 2723.759 kb on + strandat 2723.759 kb on + strandat 2723.759 kb on + strandat 2723.759 kb on + strandat 2723.759 kb on + strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.764 kb on + strandat 2723.764 kb on + strandat 2723.764 kb on + strandat 2723.764 kb on + strandat 2723.764 kb on + strandat 2723.765 kb on - strandat 2723.765 kb on - strandat 2723.765 kb on - strandat 2723.765 kb on - strandat 2723.850 kb on + strandat 2723.850 kb on + strandat 2723.850 kb on + strandat 2723.850 kb on + strandat 2723.850 kb on + strandat 2723.853 kb on + strandat 2723.853 kb on + strandat 2723.853 kb on + strandat 2723.853 kb on + strandat 2723.853 kb on + strandat 2723.853 kb on + strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2724.004 kb on + strand, within AO353_12385at 2724.004 kb on + strand, within AO353_12385at 2724.004 kb on + strand, within AO353_12385at 2724.004 kb on + strand, within AO353_12385at 2724.004 kb on + strand, within AO353_12385at 2724.004 kb on + strand, within AO353_12385at 2724.004 kb on + strand, within AO353_12385at 2724.004 kb on + strand, within AO353_12385at 2724.004 kb on + strand, within AO353_12385at 2724.004 kb on + strand, within AO353_12385at 2724.004 kb on + strand, within AO353_12385at 2724.004 kb on + strand, within AO353_12385at 2724.004 kb on + strand, within AO353_12385at 2724.004 kb on + strand, within AO353_12385at 2724.005 kb on - strandat 2724.005 kb on - strand, within AO353_12385at 2724.005 kb on - strand, within AO353_12385at 2724.005 kb on - strand, within AO353_12385at 2724.005 kb on - strand, within AO353_12385at 2724.005 kb on - strand, within AO353_12385at 2724.005 kb on - strand, within AO353_12385at 2724.005 kb on - strand, within AO353_12385at 2724.005 kb on - strand, within AO353_12385at 2724.005 kb on - strand, within AO353_12385at 2724.005 kb on - strand, within AO353_12385at 2724.102 kb on + strandat 2724.133 kb on + strandat 2724.134 kb on - strandat 2724.160 kb on + strandat 2724.160 kb on + strandat 2724.160 kb on + strandat 2724.160 kb on + strandat 2724.160 kb on + strandat 2724.161 kb on - strandat 2724.161 kb on - strandat 2724.161 kb on - strandat 2724.161 kb on - strandat 2724.161 kb on - strandat 2724.161 kb on - strandat 2724.162 kb on + strandat 2724.162 kb on + strandat 2724.162 kb on + strandat 2724.162 kb on + strandat 2724.162 kb on + strandat 2724.163 kb on - strandat 2724.163 kb on - strandat 2724.163 kb on - strandat 2724.163 kb on - strandat 2724.208 kb on + strandat 2724.208 kb on + strandat 2724.208 kb on + strandat 2724.208 kb on + strandat 2724.209 kb on - strandat 2724.271 kb on + strandat 2724.272 kb on - strandat 2724.272 kb on - strandat 2724.272 kb on - strandat 2724.272 kb on - strandat 2724.272 kb on - strandat 2724.272 kb on - strandat 2724.347 kb on + strandat 2724.347 kb on + strandat 2724.403 kb on - strand, within AO353_12390at 2724.403 kb on - strand, within AO353_12390at 2724.439 kb on - strand, within AO353_12390at 2724.439 kb on - strand, within AO353_12390at 2724.439 kb on - strand, within AO353_12390at 2724.439 kb on - strand, within AO353_12390at 2724.468 kb on + strand, within AO353_12390at 2724.584 kb on + strand, within AO353_12390at 2724.680 kb on + strand, within AO353_12390

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,722,559 - AO353_12375 0.43 -0.1
2,723,721 - +0.8
2,723,721 - +1.1
2,723,721 - -0.7
2,723,721 - -0.3
2,723,759 + -1.0
2,723,759 + -0.9
2,723,759 + -0.2
2,723,759 + +0.0
2,723,759 + +1.1
2,723,759 + +0.6
2,723,759 + +0.2
2,723,760 - -0.9
2,723,760 - -0.4
2,723,760 - -0.5
2,723,760 - +1.8
2,723,760 - +1.1
2,723,760 - -0.1
2,723,760 - -0.0
2,723,760 - -0.1
2,723,760 - -0.6
2,723,760 - +0.6
2,723,764 + +0.7
2,723,764 + +0.7
2,723,764 + -0.7
2,723,764 + -1.5
2,723,764 + +0.6
2,723,765 - +1.5
2,723,765 - +0.3
2,723,765 - -0.5
2,723,765 - -0.5
2,723,850 + -1.4
2,723,850 + +0.3
2,723,850 + -0.3
2,723,850 + -2.4
2,723,850 + -0.9
2,723,853 + -0.8
2,723,853 + -0.7
2,723,853 + +0.6
2,723,853 + -0.6
2,723,853 + +0.5
2,723,853 + +0.1
2,723,854 - -0.9
2,723,854 - -0.0
2,723,854 - -1.2
2,723,854 - -0.3
2,723,854 - -0.2
2,723,854 - +0.4
2,723,854 - -0.6
2,723,854 - +0.4
2,723,854 - +1.4
2,723,854 - +0.6
2,724,004 + AO353_12385 0.59 +1.4
2,724,004 + AO353_12385 0.59 -0.6
2,724,004 + AO353_12385 0.59 -1.0
2,724,004 + AO353_12385 0.59 -1.0
2,724,004 + AO353_12385 0.59 +0.6
2,724,004 + AO353_12385 0.59 -0.4
2,724,004 + AO353_12385 0.59 -0.1
2,724,004 + AO353_12385 0.59 +1.0
2,724,004 + AO353_12385 0.59 +0.3
2,724,004 + AO353_12385 0.59 +0.4
2,724,004 + AO353_12385 0.59 -0.7
2,724,004 + AO353_12385 0.59 +1.1
2,724,004 + AO353_12385 0.59 +0.1
2,724,004 + AO353_12385 0.59 -0.6
2,724,005 - +1.4
2,724,005 - AO353_12385 0.59 +0.6
2,724,005 - AO353_12385 0.59 -0.6
2,724,005 - AO353_12385 0.59 +1.4
2,724,005 - AO353_12385 0.59 -0.3
2,724,005 - AO353_12385 0.59 +1.1
2,724,005 - AO353_12385 0.59 +0.0
2,724,005 - AO353_12385 0.59 +1.6
2,724,005 - AO353_12385 0.59 +2.8
2,724,005 - AO353_12385 0.59 -1.7
2,724,005 - AO353_12385 0.59 +0.5
2,724,102 + -0.8
2,724,133 + -1.4
2,724,134 - -0.3
2,724,160 + +0.3
2,724,160 + -1.7
2,724,160 + +0.6
2,724,160 + -1.2
2,724,160 + -0.6
2,724,161 - +0.9
2,724,161 - +0.7
2,724,161 - +0.4
2,724,161 - -0.8
2,724,161 - +0.5
2,724,161 - +0.5
2,724,162 + +0.2
2,724,162 + +0.4
2,724,162 + +0.0
2,724,162 + +0.6
2,724,162 + -0.5
2,724,163 - -1.3
2,724,163 - -1.0
2,724,163 - -0.5
2,724,163 - +1.8
2,724,208 + -1.3
2,724,208 + +1.8
2,724,208 + +0.5
2,724,208 + +0.5
2,724,209 - -0.0
2,724,271 + -1.8
2,724,272 - -0.7
2,724,272 - -0.5
2,724,272 - +1.2
2,724,272 - -1.5
2,724,272 - +0.4
2,724,272 - -1.2
2,724,347 + +0.2
2,724,347 + +1.4
2,724,403 - AO353_12390 0.16 +0.5
2,724,403 - AO353_12390 0.16 -0.8
2,724,439 - AO353_12390 0.24 -0.2
2,724,439 - AO353_12390 0.24 -0.3
2,724,439 - AO353_12390 0.24 -1.3
2,724,439 - AO353_12390 0.24 +0.8
2,724,468 + AO353_12390 0.31 +1.1
2,724,584 + AO353_12390 0.59 -0.0
2,724,680 + AO353_12390 0.81 -0.3

Or see this region's nucleotide sequence