Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12075

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12065 and AO353_12070 are separated by 238 nucleotidesAO353_12070 and AO353_12075 overlap by 1 nucleotidesAO353_12075 and AO353_12080 overlap by 1 nucleotidesAO353_12080 and AO353_12085 are separated by 42 nucleotides AO353_12065: AO353_12065 - MFS transporter, at 2,652,447 to 2,654,108 _12065 AO353_12070: AO353_12070 - imidazoleglycerol-phosphate dehydratase, at 2,654,347 to 2,654,940 _12070 AO353_12075: AO353_12075 - imidazole glycerol phosphate synthase subunit HisH, at 2,654,940 to 2,655,578 _12075 AO353_12080: AO353_12080 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 2,655,578 to 2,655,835 _12080 AO353_12085: AO353_12085 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 2,655,878 to 2,656,615 _12085 Position (kb) 2654 2655 2656Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2654.126 kb on - strandat 2654.126 kb on - strandat 2654.126 kb on - strandat 2654.173 kb on + strandat 2654.173 kb on + strandat 2654.173 kb on + strandat 2654.173 kb on + strandat 2654.173 kb on + strandat 2654.174 kb on - strandat 2654.174 kb on - strandat 2654.174 kb on - strandat 2654.174 kb on - strandat 2654.174 kb on - strandat 2654.174 kb on - strandat 2654.174 kb on - strandat 2654.174 kb on - strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.213 kb on + strandat 2654.214 kb on - strandat 2654.214 kb on - strandat 2654.214 kb on - strandat 2654.214 kb on - strandat 2654.214 kb on - strandat 2654.214 kb on - strandat 2654.214 kb on - strandat 2654.214 kb on - strandat 2654.214 kb on - strandat 2654.214 kb on - strandat 2654.214 kb on - strandat 2654.229 kb on + strandat 2654.229 kb on + strandat 2654.229 kb on + strandat 2654.229 kb on + strandat 2654.229 kb on + strandat 2654.229 kb on + strandat 2654.229 kb on + strandat 2654.229 kb on + strandat 2654.230 kb on - strandat 2654.230 kb on - strandat 2654.230 kb on - strandat 2654.230 kb on - strandat 2654.230 kb on - strandat 2654.230 kb on - strandat 2654.230 kb on - strandat 2654.266 kb on + strandat 2654.303 kb on + strandat 2654.303 kb on + strandat 2654.304 kb on - strandat 2654.304 kb on - strandat 2654.305 kb on + strandat 2654.306 kb on - strandat 2654.306 kb on - strandat 2654.358 kb on + strandat 2654.358 kb on + strandat 2654.358 kb on + strandat 2654.358 kb on + strandat 2654.358 kb on + strandat 2654.358 kb on + strandat 2654.358 kb on + strandat 2654.358 kb on + strandat 2654.359 kb on - strandat 2654.359 kb on - strandat 2654.359 kb on - strandat 2654.359 kb on - strandat 2654.509 kb on - strand, within AO353_12070at 2654.532 kb on + strand, within AO353_12070at 2654.635 kb on + strand, within AO353_12070at 2654.635 kb on + strand, within AO353_12070at 2654.635 kb on + strand, within AO353_12070at 2654.635 kb on + strand, within AO353_12070at 2654.635 kb on + strand, within AO353_12070at 2654.635 kb on + strand, within AO353_12070at 2654.635 kb on + strand, within AO353_12070at 2654.635 kb on + strand, within AO353_12070at 2654.635 kb on + strand, within AO353_12070at 2654.636 kb on - strand, within AO353_12070at 2654.636 kb on - strand, within AO353_12070at 2654.636 kb on - strand, within AO353_12070at 2654.708 kb on + strand, within AO353_12070at 2654.708 kb on + strand, within AO353_12070at 2654.708 kb on + strand, within AO353_12070at 2654.708 kb on + strand, within AO353_12070at 2654.708 kb on + strand, within AO353_12070at 2654.708 kb on + strand, within AO353_12070at 2654.708 kb on + strand, within AO353_12070at 2654.708 kb on + strand, within AO353_12070at 2654.708 kb on + strand, within AO353_12070at 2654.708 kb on + strand, within AO353_12070at 2654.708 kb on + strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.709 kb on - strand, within AO353_12070at 2654.713 kb on + strand, within AO353_12070at 2654.713 kb on + strand, within AO353_12070at 2654.713 kb on + strand, within AO353_12070at 2654.713 kb on + strand, within AO353_12070at 2654.714 kb on - strand, within AO353_12070at 2654.714 kb on - strand, within AO353_12070at 2654.714 kb on - strand, within AO353_12070at 2654.714 kb on - strand, within AO353_12070at 2654.714 kb on - strand, within AO353_12070at 2654.714 kb on - strand, within AO353_12070at 2654.714 kb on - strand, within AO353_12070at 2654.714 kb on - strand, within AO353_12070at 2654.715 kb on + strand, within AO353_12070at 2654.938 kb on + strandat 2654.938 kb on + strandat 2654.938 kb on + strandat 2654.938 kb on + strandat 2655.387 kb on + strand, within AO353_12075at 2655.387 kb on + strand, within AO353_12075at 2655.387 kb on + strand, within AO353_12075at 2655.388 kb on - strand, within AO353_12075at 2655.388 kb on - strand, within AO353_12075at 2655.388 kb on - strand, within AO353_12075at 2655.388 kb on - strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.406 kb on - strand, within AO353_12075at 2655.406 kb on - strand, within AO353_12075at 2655.406 kb on - strand, within AO353_12075at 2655.406 kb on - strand, within AO353_12075at 2655.406 kb on - strand, within AO353_12075at 2655.451 kb on - strand, within AO353_12075at 2655.743 kb on + strand, within AO353_12080at 2655.743 kb on + strand, within AO353_12080at 2655.743 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.747 kb on - strand, within AO353_12080at 2655.747 kb on - strand, within AO353_12080at 2655.747 kb on - strand, within AO353_12080at 2655.747 kb on - strandat 2655.747 kb on - strand, within AO353_12080at 2655.747 kb on - strand, within AO353_12080at 2655.747 kb on - strand, within AO353_12080at 2655.747 kb on - strand, within AO353_12080at 2655.864 kb on + strandat 2655.865 kb on - strandat 2655.886 kb on + strandat 2655.887 kb on - strandat 2655.887 kb on - strandat 2655.887 kb on - strandat 2655.887 kb on - strandat 2655.904 kb on + strandat 2655.904 kb on + strandat 2655.904 kb on + strandat 2655.904 kb on + strandat 2656.154 kb on + strand, within AO353_12085at 2656.154 kb on + strand, within AO353_12085at 2656.154 kb on + strand, within AO353_12085at 2656.154 kb on + strand, within AO353_12085at 2656.154 kb on + strand, within AO353_12085at 2656.154 kb on + strand, within AO353_12085at 2656.155 kb on - strand, within AO353_12085at 2656.155 kb on - strand, within AO353_12085at 2656.155 kb on - strand, within AO353_12085at 2656.175 kb on + strand, within AO353_12085at 2656.175 kb on + strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.252 kb on + strand, within AO353_12085at 2656.373 kb on + strand, within AO353_12085at 2656.373 kb on + strand, within AO353_12085at 2656.373 kb on + strand, within AO353_12085at 2656.373 kb on + strand, within AO353_12085at 2656.373 kb on + strand, within AO353_12085at 2656.373 kb on + strand, within AO353_12085at 2656.374 kb on - strand, within AO353_12085at 2656.374 kb on - strand, within AO353_12085at 2656.421 kb on + strand, within AO353_12085at 2656.421 kb on + strand, within AO353_12085at 2656.421 kb on + strand, within AO353_12085at 2656.421 kb on + strand, within AO353_12085at 2656.422 kb on - strand, within AO353_12085at 2656.422 kb on - strand, within AO353_12085at 2656.422 kb on - strand, within AO353_12085at 2656.556 kb on + strandat 2656.557 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,654,126 - +0.3
2,654,126 - -0.1
2,654,126 - +0.1
2,654,173 + -0.3
2,654,173 + +1.1
2,654,173 + +0.3
2,654,173 + +0.3
2,654,173 + -0.9
2,654,174 - +1.1
2,654,174 - +0.7
2,654,174 - -0.4
2,654,174 - +1.3
2,654,174 - +0.2
2,654,174 - +1.1
2,654,174 - +0.1
2,654,174 - -0.1
2,654,213 + +1.1
2,654,213 + -0.1
2,654,213 + -0.1
2,654,213 + -1.2
2,654,213 + -1.8
2,654,213 + -1.2
2,654,213 + -1.1
2,654,213 + -0.0
2,654,213 + +1.1
2,654,213 + +0.1
2,654,213 + -0.9
2,654,213 + -0.9
2,654,213 + -1.2
2,654,213 + -0.2
2,654,213 + +1.2
2,654,214 - +1.0
2,654,214 - -1.2
2,654,214 - -0.5
2,654,214 - +0.3
2,654,214 - -0.3
2,654,214 - +1.8
2,654,214 - -0.8
2,654,214 - +0.2
2,654,214 - -0.2
2,654,214 - +1.9
2,654,214 - -2.0
2,654,229 + +0.7
2,654,229 + +0.2
2,654,229 + -0.7
2,654,229 + -0.8
2,654,229 + -0.7
2,654,229 + +0.3
2,654,229 + +0.5
2,654,229 + -0.5
2,654,230 - -0.4
2,654,230 - -2.4
2,654,230 - -0.8
2,654,230 - -0.2
2,654,230 - -0.7
2,654,230 - -0.2
2,654,230 - -0.0
2,654,266 + +0.0
2,654,303 + -0.7
2,654,303 + -0.3
2,654,304 - -0.7
2,654,304 - -1.5
2,654,305 + +0.8
2,654,306 - -3.5
2,654,306 - -0.9
2,654,358 + -2.2
2,654,358 + -1.7
2,654,358 + -1.4
2,654,358 + -2.2
2,654,358 + -0.1
2,654,358 + -0.6
2,654,358 + -1.6
2,654,358 + -1.0
2,654,359 - +0.1
2,654,359 - +0.5
2,654,359 - -1.7
2,654,359 - -0.4
2,654,509 - AO353_12070 0.27 -0.1
2,654,532 + AO353_12070 0.31 -0.2
2,654,635 + AO353_12070 0.48 -1.3
2,654,635 + AO353_12070 0.48 -0.3
2,654,635 + AO353_12070 0.48 -0.2
2,654,635 + AO353_12070 0.48 -0.9
2,654,635 + AO353_12070 0.48 -0.5
2,654,635 + AO353_12070 0.48 -0.5
2,654,635 + AO353_12070 0.48 -3.1
2,654,635 + AO353_12070 0.48 +0.1
2,654,635 + AO353_12070 0.48 +0.6
2,654,636 - AO353_12070 0.49 +0.1
2,654,636 - AO353_12070 0.49 -1.8
2,654,636 - AO353_12070 0.49 -2.3
2,654,708 + AO353_12070 0.61 +0.0
2,654,708 + AO353_12070 0.61 -2.6
2,654,708 + AO353_12070 0.61 -0.7
2,654,708 + AO353_12070 0.61 -0.9
2,654,708 + AO353_12070 0.61 -0.4
2,654,708 + AO353_12070 0.61 +0.5
2,654,708 + AO353_12070 0.61 -1.2
2,654,708 + AO353_12070 0.61 +0.1
2,654,708 + AO353_12070 0.61 -0.7
2,654,708 + AO353_12070 0.61 -0.8
2,654,708 + AO353_12070 0.61 -0.9
2,654,709 - AO353_12070 0.61 -0.5
2,654,709 - AO353_12070 0.61 -1.3
2,654,709 - AO353_12070 0.61 -0.2
2,654,709 - AO353_12070 0.61 +0.5
2,654,709 - AO353_12070 0.61 -1.2
2,654,709 - AO353_12070 0.61 -2.2
2,654,709 - AO353_12070 0.61 +0.0
2,654,709 - AO353_12070 0.61 -0.6
2,654,709 - AO353_12070 0.61 -0.4
2,654,709 - AO353_12070 0.61 -3.1
2,654,709 - AO353_12070 0.61 -0.4
2,654,709 - AO353_12070 0.61 -1.1
2,654,709 - AO353_12070 0.61 -2.5
2,654,709 - AO353_12070 0.61 -1.0
2,654,709 - AO353_12070 0.61 -2.3
2,654,713 + AO353_12070 0.62 -0.3
2,654,713 + AO353_12070 0.62 -1.0
2,654,713 + AO353_12070 0.62 -1.0
2,654,713 + AO353_12070 0.62 -1.7
2,654,714 - AO353_12070 0.62 -1.8
2,654,714 - AO353_12070 0.62 -1.4
2,654,714 - AO353_12070 0.62 -2.4
2,654,714 - AO353_12070 0.62 -2.5
2,654,714 - AO353_12070 0.62 -1.2
2,654,714 - AO353_12070 0.62 -1.1
2,654,714 - AO353_12070 0.62 -3.0
2,654,714 - AO353_12070 0.62 -0.2
2,654,715 + AO353_12070 0.62 +0.0
2,654,938 + -1.6
2,654,938 + -2.2
2,654,938 + -0.1
2,654,938 + -2.1
2,655,387 + AO353_12075 0.70 -1.3
2,655,387 + AO353_12075 0.70 -0.4
2,655,387 + AO353_12075 0.70 +0.7
2,655,388 - AO353_12075 0.70 +0.6
2,655,388 - AO353_12075 0.70 -1.7
2,655,388 - AO353_12075 0.70 +0.7
2,655,388 - AO353_12075 0.70 +1.2
2,655,402 + AO353_12075 0.72 -0.1
2,655,402 + AO353_12075 0.72 +0.9
2,655,402 + AO353_12075 0.72 -1.3
2,655,402 + AO353_12075 0.72 -0.9
2,655,402 + AO353_12075 0.72 -1.6
2,655,402 + AO353_12075 0.72 -0.1
2,655,402 + AO353_12075 0.72 -2.6
2,655,402 + AO353_12075 0.72 -1.8
2,655,402 + AO353_12075 0.72 -1.3
2,655,402 + AO353_12075 0.72 +0.3
2,655,402 + AO353_12075 0.72 -1.0
2,655,402 + AO353_12075 0.72 +1.7
2,655,402 + AO353_12075 0.72 -0.3
2,655,402 + AO353_12075 0.72 -1.0
2,655,402 + AO353_12075 0.72 -1.7
2,655,402 + AO353_12075 0.72 -0.7
2,655,402 + AO353_12075 0.72 -2.5
2,655,402 + AO353_12075 0.72 +1.9
2,655,402 + AO353_12075 0.72 +0.0
2,655,403 - AO353_12075 0.72 -1.7
2,655,403 - AO353_12075 0.72 -2.0
2,655,403 - AO353_12075 0.72 -1.7
2,655,403 - AO353_12075 0.72 -1.4
2,655,403 - AO353_12075 0.72 -0.7
2,655,403 - AO353_12075 0.72 -0.2
2,655,403 - AO353_12075 0.72 -0.1
2,655,403 - AO353_12075 0.72 -0.6
2,655,403 - AO353_12075 0.72 +0.5
2,655,403 - AO353_12075 0.72 -1.9
2,655,403 - AO353_12075 0.72 -0.6
2,655,405 + AO353_12075 0.73 -0.5
2,655,405 + AO353_12075 0.73 -1.4
2,655,405 + AO353_12075 0.73 +0.7
2,655,405 + AO353_12075 0.73 -2.1
2,655,405 + AO353_12075 0.73 -0.4
2,655,405 + AO353_12075 0.73 -2.3
2,655,405 + AO353_12075 0.73 -2.3
2,655,405 + AO353_12075 0.73 -0.3
2,655,406 - AO353_12075 0.73 -0.4
2,655,406 - AO353_12075 0.73 -1.2
2,655,406 - AO353_12075 0.73 -2.0
2,655,406 - AO353_12075 0.73 -1.3
2,655,406 - AO353_12075 0.73 -1.7
2,655,451 - AO353_12075 0.80 +0.8
2,655,743 + AO353_12080 0.64 +0.9
2,655,743 + AO353_12080 0.64 -0.5
2,655,743 + AO353_12080 0.64 +0.6
2,655,746 + AO353_12080 0.65 -0.5
2,655,746 + AO353_12080 0.65 -1.5
2,655,746 + AO353_12080 0.65 -0.3
2,655,746 + AO353_12080 0.65 -0.8
2,655,746 + AO353_12080 0.65 -1.2
2,655,746 + AO353_12080 0.65 +0.0
2,655,746 + AO353_12080 0.65 +2.5
2,655,746 + AO353_12080 0.65 -0.6
2,655,747 - AO353_12080 0.66 -1.4
2,655,747 - AO353_12080 0.66 -0.7
2,655,747 - AO353_12080 0.66 -0.9
2,655,747 - +1.1
2,655,747 - AO353_12080 0.66 -1.3
2,655,747 - AO353_12080 0.66 +0.1
2,655,747 - AO353_12080 0.66 -2.3
2,655,747 - AO353_12080 0.66 +0.5
2,655,864 + -0.9
2,655,865 - -1.1
2,655,886 + -1.2
2,655,887 - +0.7
2,655,887 - -0.1
2,655,887 - -3.0
2,655,887 - -2.4
2,655,904 + -1.5
2,655,904 + +0.1
2,655,904 + -1.9
2,655,904 + -0.8
2,656,154 + AO353_12085 0.37 -3.1
2,656,154 + AO353_12085 0.37 -0.9
2,656,154 + AO353_12085 0.37 -2.1
2,656,154 + AO353_12085 0.37 -2.1
2,656,154 + AO353_12085 0.37 -0.3
2,656,154 + AO353_12085 0.37 -1.8
2,656,155 - AO353_12085 0.38 -0.3
2,656,155 - AO353_12085 0.38 -1.1
2,656,155 - AO353_12085 0.38 +0.0
2,656,175 + AO353_12085 0.40 -2.0
2,656,175 + AO353_12085 0.40 -0.4
2,656,176 - AO353_12085 0.40 +0.1
2,656,176 - AO353_12085 0.40 +0.0
2,656,176 - AO353_12085 0.40 -1.3
2,656,176 - AO353_12085 0.40 -1.8
2,656,176 - AO353_12085 0.40 -1.0
2,656,176 - AO353_12085 0.40 -1.9
2,656,176 - AO353_12085 0.40 -0.1
2,656,176 - AO353_12085 0.40 -2.3
2,656,176 - AO353_12085 0.40 -0.5
2,656,252 + AO353_12085 0.51 -2.1
2,656,373 + AO353_12085 0.67 -2.3
2,656,373 + AO353_12085 0.67 -1.5
2,656,373 + AO353_12085 0.67 -0.6
2,656,373 + AO353_12085 0.67 -1.1
2,656,373 + AO353_12085 0.67 -2.3
2,656,373 + AO353_12085 0.67 -2.2
2,656,374 - AO353_12085 0.67 -1.7
2,656,374 - AO353_12085 0.67 -0.5
2,656,421 + AO353_12085 0.74 -1.7
2,656,421 + AO353_12085 0.74 -0.4
2,656,421 + AO353_12085 0.74 -0.9
2,656,421 + AO353_12085 0.74 -0.9
2,656,422 - AO353_12085 0.74 -0.8
2,656,422 - AO353_12085 0.74 -1.3
2,656,422 - AO353_12085 0.74 -2.0
2,656,556 + +0.4
2,656,557 - +0.3

Or see this region's nucleotide sequence