Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06650

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06640 and AO353_06645 are separated by 342 nucleotidesAO353_06645 and AO353_06650 overlap by 4 nucleotidesAO353_06650 and AO353_06655 are separated by 110 nucleotides AO353_06640: AO353_06640 - hypothetical protein, at 1,481,006 to 1,481,797 _06640 AO353_06645: AO353_06645 - exodeoxyribonuclease VII small subunit, at 1,482,140 to 1,482,382 _06645 AO353_06650: AO353_06650 - geranyl transferase, at 1,482,379 to 1,483,266 _06650 AO353_06655: AO353_06655 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,483,377 to 1,485,275 _06655 Position (kb) 1482 1483 1484Strain fitness (log2 ratio) -2 -1 0 1 2at 1481.421 kb on + strand, within AO353_06640at 1481.421 kb on + strand, within AO353_06640at 1481.421 kb on + strand, within AO353_06640at 1481.421 kb on + strand, within AO353_06640at 1481.421 kb on + strand, within AO353_06640at 1481.421 kb on + strand, within AO353_06640at 1481.421 kb on + strand, within AO353_06640at 1481.421 kb on + strand, within AO353_06640at 1481.422 kb on - strand, within AO353_06640at 1481.422 kb on - strand, within AO353_06640at 1481.458 kb on + strand, within AO353_06640at 1481.458 kb on + strand, within AO353_06640at 1481.458 kb on + strand, within AO353_06640at 1481.458 kb on + strand, within AO353_06640at 1481.459 kb on - strand, within AO353_06640at 1481.459 kb on - strand, within AO353_06640at 1481.459 kb on - strand, within AO353_06640at 1481.459 kb on - strand, within AO353_06640at 1481.496 kb on + strand, within AO353_06640at 1481.496 kb on + strand, within AO353_06640at 1481.496 kb on + strand, within AO353_06640at 1481.496 kb on + strand, within AO353_06640at 1481.496 kb on + strand, within AO353_06640at 1481.496 kb on + strand, within AO353_06640at 1481.496 kb on + strand, within AO353_06640at 1481.497 kb on - strand, within AO353_06640at 1481.497 kb on - strand, within AO353_06640at 1481.497 kb on - strand, within AO353_06640at 1481.497 kb on - strand, within AO353_06640at 1481.497 kb on - strand, within AO353_06640at 1481.529 kb on + strand, within AO353_06640at 1481.529 kb on + strand, within AO353_06640at 1481.530 kb on - strand, within AO353_06640at 1481.696 kb on - strand, within AO353_06640at 1481.698 kb on - strand, within AO353_06640at 1481.698 kb on - strand, within AO353_06640at 1481.901 kb on + strandat 1481.901 kb on + strandat 1481.901 kb on + strandat 1481.902 kb on - strandat 1481.902 kb on - strandat 1481.947 kb on + strandat 1481.947 kb on + strandat 1481.948 kb on - strandat 1481.948 kb on - strandat 1481.953 kb on + strandat 1481.953 kb on + strandat 1482.042 kb on + strandat 1482.042 kb on + strandat 1482.042 kb on + strandat 1482.043 kb on - strandat 1482.094 kb on - strandat 1482.100 kb on + strandat 1482.100 kb on + strandat 1482.100 kb on + strandat 1482.100 kb on + strandat 1482.100 kb on + strandat 1482.100 kb on + strandat 1483.288 kb on + strandat 1483.288 kb on + strandat 1483.288 kb on + strandat 1483.288 kb on + strandat 1483.289 kb on - strandat 1483.289 kb on - strandat 1483.355 kb on + strandat 1483.355 kb on + strandat 1483.355 kb on + strandat 1483.355 kb on + strandat 1483.357 kb on + strandat 1483.357 kb on + strandat 1483.357 kb on + strandat 1483.357 kb on + strandat 1483.357 kb on + strandat 1483.357 kb on + strandat 1483.357 kb on + strandat 1483.357 kb on + strandat 1483.361 kb on + strandat 1483.361 kb on + strandat 1483.361 kb on + strandat 1483.361 kb on + strandat 1483.361 kb on + strandat 1483.361 kb on + strandat 1483.361 kb on + strandat 1483.361 kb on + strandat 1483.361 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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1,481,421 + AO353_06640 0.52 +0.9
1,481,421 + AO353_06640 0.52 +0.1
1,481,421 + AO353_06640 0.52 -0.9
1,481,421 + AO353_06640 0.52 -0.9
1,481,421 + AO353_06640 0.52 -0.0
1,481,421 + AO353_06640 0.52 -0.0
1,481,421 + AO353_06640 0.52 +0.5
1,481,421 + AO353_06640 0.52 -1.1
1,481,422 - AO353_06640 0.53 -0.8
1,481,422 - AO353_06640 0.53 +1.3
1,481,458 + AO353_06640 0.57 -0.4
1,481,458 + AO353_06640 0.57 -0.3
1,481,458 + AO353_06640 0.57 +0.8
1,481,458 + AO353_06640 0.57 +0.9
1,481,459 - AO353_06640 0.57 +2.5
1,481,459 - AO353_06640 0.57 -0.3
1,481,459 - AO353_06640 0.57 -0.5
1,481,459 - AO353_06640 0.57 -0.1
1,481,496 + AO353_06640 0.62 -1.3
1,481,496 + AO353_06640 0.62 +0.7
1,481,496 + AO353_06640 0.62 +0.3
1,481,496 + AO353_06640 0.62 +1.7
1,481,496 + AO353_06640 0.62 -0.0
1,481,496 + AO353_06640 0.62 -1.1
1,481,496 + AO353_06640 0.62 -1.8
1,481,497 - AO353_06640 0.62 +1.4
1,481,497 - AO353_06640 0.62 +0.2
1,481,497 - AO353_06640 0.62 -1.3
1,481,497 - AO353_06640 0.62 -0.2
1,481,497 - AO353_06640 0.62 +0.4
1,481,529 + AO353_06640 0.66 -0.3
1,481,529 + AO353_06640 0.66 +1.7
1,481,530 - AO353_06640 0.66 +0.3
1,481,696 - AO353_06640 0.87 +0.5
1,481,698 - AO353_06640 0.87 -0.2
1,481,698 - AO353_06640 0.87 -0.4
1,481,901 + -1.5
1,481,901 + -0.7
1,481,901 + +2.3
1,481,902 - -0.5
1,481,902 - +1.7
1,481,947 + +0.7
1,481,947 + +0.1
1,481,948 - -0.5
1,481,948 - +1.5
1,481,953 + -0.1
1,481,953 + +0.0
1,482,042 + -1.9
1,482,042 + -1.5
1,482,042 + -0.2
1,482,043 - +0.4
1,482,094 - +0.1
1,482,100 + +1.6
1,482,100 + -1.3
1,482,100 + +0.7
1,482,100 + +0.9
1,482,100 + +1.3
1,482,100 + +1.3
1,483,288 + -1.0
1,483,288 + -1.3
1,483,288 + -0.6
1,483,288 + +0.2
1,483,289 - +0.3
1,483,289 - -1.2
1,483,355 + +1.1
1,483,355 + -1.3
1,483,355 + +1.1
1,483,355 + +0.3
1,483,357 + -0.5
1,483,357 + -0.7
1,483,357 + +0.3
1,483,357 + +1.5
1,483,357 + +0.3
1,483,357 + +1.0
1,483,357 + -1.8
1,483,357 + -1.0
1,483,361 + -0.3
1,483,361 + -1.8
1,483,361 + -2.0
1,483,361 + +1.7
1,483,361 + +1.7
1,483,361 + -0.7
1,483,361 + -1.4
1,483,361 + +1.1
1,483,361 + -1.1

Or see this region's nucleotide sequence