Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06170

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06165 and AO353_06170 are separated by 227 nucleotidesAO353_06170 and AO353_06175 are separated by 5 nucleotidesAO353_06175 and AO353_06180 are separated by 66 nucleotides AO353_06165: AO353_06165 - MFS transporter, at 1,375,178 to 1,376,419 _06165 AO353_06170: AO353_06170 - 3-dehydroquinate dehydratase, at 1,376,647 to 1,377,087 _06170 AO353_06175: AO353_06175 - shikimate dehydrogenase, at 1,377,093 to 1,377,947 _06175 AO353_06180: AO353_06180 - TetR family transcriptional regulator, at 1,378,014 to 1,378,691 _06180 Position (kb) 1376 1377 1378Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1375.684 kb on + strand, within AO353_06165at 1375.685 kb on - strandat 1375.862 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1376.065 kb on + strand, within AO353_06165at 1376.065 kb on + strand, within AO353_06165at 1376.099 kb on + strand, within AO353_06165at 1376.100 kb on - strand, within AO353_06165at 1376.100 kb on - strand, within AO353_06165at 1376.100 kb on - strand, within AO353_06165at 1376.126 kb on + strand, within AO353_06165at 1376.126 kb on + strand, within AO353_06165at 1376.126 kb on + strand, within AO353_06165at 1376.127 kb on - strand, within AO353_06165at 1376.141 kb on + strand, within AO353_06165at 1376.141 kb on + strand, within AO353_06165at 1376.142 kb on - strand, within AO353_06165at 1376.142 kb on - strand, within AO353_06165at 1376.142 kb on - strand, within AO353_06165at 1376.171 kb on + strand, within AO353_06165at 1376.293 kb on + strand, within AO353_06165at 1376.293 kb on + strand, within AO353_06165at 1376.293 kb on + strand, within AO353_06165at 1376.293 kb on + strand, within AO353_06165at 1376.293 kb on + strand, within AO353_06165at 1376.293 kb on + strand, within AO353_06165at 1376.293 kb on + strand, within AO353_06165at 1376.293 kb on + strand, within AO353_06165at 1376.293 kb on + strand, within AO353_06165at 1376.293 kb on + strand, within AO353_06165at 1376.293 kb on + strand, within AO353_06165at 1376.294 kb on - strand, within AO353_06165at 1376.294 kb on - strand, within AO353_06165at 1376.294 kb on - strand, within AO353_06165at 1376.294 kb on - strand, within AO353_06165at 1376.294 kb on - strand, within AO353_06165at 1376.295 kb on + strandat 1376.295 kb on + strandat 1376.295 kb on + strandat 1376.295 kb on + strandat 1376.295 kb on + strandat 1376.295 kb on + strandat 1376.295 kb on + strandat 1376.295 kb on + strandat 1376.295 kb on + strandat 1376.295 kb on + strandat 1376.295 kb on + strandat 1376.295 kb on + strandat 1376.295 kb on + strandat 1376.296 kb on - strandat 1376.296 kb on - strandat 1376.296 kb on - strandat 1376.296 kb on - strandat 1376.296 kb on - strandat 1376.296 kb on - strandat 1376.296 kb on - strandat 1376.301 kb on + strandat 1376.301 kb on + strandat 1376.301 kb on + strandat 1376.301 kb on + strandat 1376.301 kb on + strandat 1376.301 kb on + strandat 1376.301 kb on + strandat 1376.301 kb on + strandat 1376.301 kb on + strandat 1376.301 kb on + strandat 1376.301 kb on + strandat 1376.301 kb on + strandat 1376.301 kb on + strandat 1376.302 kb on - strandat 1376.302 kb on - strandat 1376.302 kb on - strandat 1376.302 kb on - strandat 1376.302 kb on - strandat 1376.302 kb on - strandat 1376.302 kb on - strandat 1376.302 kb on - strandat 1376.302 kb on - strandat 1376.302 kb on - strandat 1376.302 kb on - strandat 1376.321 kb on - strandat 1376.465 kb on + strandat 1376.465 kb on + strandat 1376.465 kb on + strandat 1376.465 kb on + strandat 1376.465 kb on + strandat 1376.465 kb on + strandat 1376.465 kb on + strandat 1376.466 kb on - strandat 1376.466 kb on - strandat 1376.466 kb on - strandat 1376.466 kb on - strandat 1376.466 kb on - strandat 1376.524 kb on + strandat 1376.524 kb on + strandat 1376.524 kb on + strandat 1376.524 kb on + strandat 1376.524 kb on + strandat 1376.525 kb on - strandat 1376.525 kb on - strandat 1376.525 kb on - strandat 1376.525 kb on - strandat 1376.525 kb on - strandat 1376.525 kb on - strandat 1376.525 kb on - strandat 1376.535 kb on + strandat 1376.627 kb on + strandat 1376.627 kb on + strandat 1376.628 kb on - strandat 1376.628 kb on - strandat 1376.628 kb on - strandat 1376.628 kb on - strandat 1376.628 kb on - strandat 1376.628 kb on - strandat 1376.628 kb on - strandat 1376.628 kb on - strandat 1376.716 kb on + strand, within AO353_06170at 1376.716 kb on + strand, within AO353_06170at 1376.716 kb on + strand, within AO353_06170at 1376.716 kb on + strand, within AO353_06170at 1376.716 kb on + strand, within AO353_06170at 1376.716 kb on + strand, within AO353_06170at 1376.717 kb on - strand, within AO353_06170at 1376.717 kb on - strand, within AO353_06170at 1376.717 kb on - strand, within AO353_06170at 1376.717 kb on - strand, within AO353_06170at 1376.717 kb on - strand, within AO353_06170at 1376.717 kb on - strand, within AO353_06170at 1376.717 kb on - strand, within AO353_06170at 1376.717 kb on - strand, within AO353_06170at 1376.945 kb on + strand, within AO353_06170at 1376.945 kb on + strand, within AO353_06170at 1376.945 kb on + strand, within AO353_06170at 1376.945 kb on + strand, within AO353_06170at 1376.945 kb on + strand, within AO353_06170at 1376.945 kb on + strand, within AO353_06170at 1376.945 kb on + strand, within AO353_06170at 1376.946 kb on - strand, within AO353_06170at 1376.946 kb on - strand, within AO353_06170at 1376.946 kb on - strand, within AO353_06170at 1376.946 kb on - strand, within AO353_06170at 1376.946 kb on - strand, within AO353_06170at 1376.946 kb on - strand, within AO353_06170at 1376.946 kb on - strand, within AO353_06170at 1376.946 kb on - strand, within AO353_06170at 1377.085 kb on + strandat 1377.085 kb on + strandat 1377.085 kb on + strandat 1377.085 kb on + strandat 1377.086 kb on - strandat 1377.086 kb on - strandat 1377.199 kb on - strand, within AO353_06175at 1377.199 kb on - strand, within AO353_06175at 1377.205 kb on - strand, within AO353_06175at 1377.365 kb on + strand, within AO353_06175at 1377.365 kb on + strand, within AO353_06175at 1377.365 kb on + strandat 1377.365 kb on + strand, within AO353_06175at 1377.366 kb on - strand, within AO353_06175at 1377.366 kb on - strand, within AO353_06175at 1377.366 kb on - strand, within AO353_06175at 1377.366 kb on - strand, within AO353_06175at 1377.560 kb on + strand, within AO353_06175at 1377.560 kb on + strand, within AO353_06175at 1377.560 kb on + strand, within AO353_06175at 1377.561 kb on - strand, within AO353_06175at 1377.689 kb on + strand, within AO353_06175at 1377.690 kb on - strand, within AO353_06175at 1377.690 kb on - strand, within AO353_06175at 1377.690 kb on - strand, within AO353_06175at 1377.690 kb on - strand, within AO353_06175at 1377.777 kb on + strand, within AO353_06175at 1377.777 kb on + strand, within AO353_06175at 1377.778 kb on - strand, within AO353_06175at 1377.831 kb on - strand, within AO353_06175at 1377.831 kb on - strand, within AO353_06175at 1377.868 kb on + strandat 1377.868 kb on + strandat 1378.027 kb on + strandat 1378.028 kb on - strandat 1378.028 kb on - strandat 1378.028 kb on - strandat 1378.035 kb on + strandat 1378.035 kb on + strandat 1378.035 kb on + strandat 1378.035 kb on + strandat 1378.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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1,375,684 + AO353_06165 0.41 -1.1
1,375,685 - +2.6
1,375,862 + AO353_06165 0.55 -0.3
1,375,878 + AO353_06165 0.56 +1.3
1,375,878 + AO353_06165 0.56 +0.9
1,375,878 + AO353_06165 0.56 +0.2
1,375,878 + AO353_06165 0.56 -0.5
1,375,878 + AO353_06165 0.56 +0.2
1,375,878 + AO353_06165 0.56 +0.2
1,375,878 + AO353_06165 0.56 +0.4
1,375,878 + AO353_06165 0.56 -0.3
1,375,878 + AO353_06165 0.56 +0.7
1,375,879 - AO353_06165 0.56 +0.1
1,375,879 - AO353_06165 0.56 +1.1
1,375,879 - AO353_06165 0.56 +0.9
1,375,879 - AO353_06165 0.56 +1.2
1,375,879 - AO353_06165 0.56 +1.6
1,375,879 - AO353_06165 0.56 -0.4
1,375,879 - AO353_06165 0.56 +0.4
1,375,879 - AO353_06165 0.56 -0.1
1,375,879 - AO353_06165 0.56 -2.6
1,375,879 - AO353_06165 0.56 -0.7
1,375,879 - AO353_06165 0.56 +0.2
1,376,065 + AO353_06165 0.71 -0.5
1,376,065 + AO353_06165 0.71 -0.2
1,376,099 + AO353_06165 0.74 -0.3
1,376,100 - AO353_06165 0.74 +0.3
1,376,100 - AO353_06165 0.74 +0.5
1,376,100 - AO353_06165 0.74 +0.9
1,376,126 + AO353_06165 0.76 -0.9
1,376,126 + AO353_06165 0.76 +0.0
1,376,126 + AO353_06165 0.76 +0.3
1,376,127 - AO353_06165 0.76 -0.4
1,376,141 + AO353_06165 0.78 -0.8
1,376,141 + AO353_06165 0.78 +0.2
1,376,142 - AO353_06165 0.78 -0.6
1,376,142 - AO353_06165 0.78 -0.9
1,376,142 - AO353_06165 0.78 -0.7
1,376,171 + AO353_06165 0.80 -0.4
1,376,293 + AO353_06165 0.90 +1.6
1,376,293 + AO353_06165 0.90 -0.3
1,376,293 + AO353_06165 0.90 +0.4
1,376,293 + AO353_06165 0.90 -0.8
1,376,293 + AO353_06165 0.90 -0.8
1,376,293 + AO353_06165 0.90 -1.4
1,376,293 + AO353_06165 0.90 -0.8
1,376,293 + AO353_06165 0.90 -1.0
1,376,293 + AO353_06165 0.90 -0.8
1,376,293 + AO353_06165 0.90 -0.3
1,376,293 + AO353_06165 0.90 -0.5
1,376,294 - AO353_06165 0.90 -0.5
1,376,294 - AO353_06165 0.90 -1.0
1,376,294 - AO353_06165 0.90 +0.0
1,376,294 - AO353_06165 0.90 -0.8
1,376,294 - AO353_06165 0.90 +0.3
1,376,295 + -0.4
1,376,295 + +0.4
1,376,295 + +0.0
1,376,295 + +0.7
1,376,295 + -0.9
1,376,295 + +0.1
1,376,295 + -1.0
1,376,295 + +0.4
1,376,295 + +0.6
1,376,295 + +0.5
1,376,295 + +0.2
1,376,295 + -0.9
1,376,295 + +0.5
1,376,296 - +1.1
1,376,296 - +0.4
1,376,296 - +0.8
1,376,296 - -1.2
1,376,296 - +0.5
1,376,296 - -0.6
1,376,296 - +1.6
1,376,301 + -0.3
1,376,301 + -0.8
1,376,301 + -0.0
1,376,301 + +0.9
1,376,301 + -0.4
1,376,301 + -0.3
1,376,301 + -0.6
1,376,301 + +0.3
1,376,301 + +0.6
1,376,301 + +0.9
1,376,301 + +1.3
1,376,301 + -0.2
1,376,301 + -1.9
1,376,302 - -0.1
1,376,302 - +0.4
1,376,302 - -0.1
1,376,302 - +0.1
1,376,302 - -0.8
1,376,302 - +1.2
1,376,302 - -2.3
1,376,302 - -0.2
1,376,302 - +1.6
1,376,302 - +0.2
1,376,302 - +0.5
1,376,321 - +0.2
1,376,465 + -1.3
1,376,465 + +0.0
1,376,465 + -1.3
1,376,465 + -1.4
1,376,465 + +0.6
1,376,465 + -0.6
1,376,465 + -0.6
1,376,466 - -0.1
1,376,466 - +0.9
1,376,466 - +0.7
1,376,466 - +1.3
1,376,466 - +0.8
1,376,524 + +0.3
1,376,524 + -0.7
1,376,524 + +1.3
1,376,524 + -0.8
1,376,524 + +1.0
1,376,525 - -0.5
1,376,525 - +0.2
1,376,525 - -0.3
1,376,525 - -0.5
1,376,525 - -2.0
1,376,525 - +0.4
1,376,525 - -0.1
1,376,535 + -1.9
1,376,627 + +0.8
1,376,627 + +0.5
1,376,628 - +0.9
1,376,628 - -0.5
1,376,628 - +1.4
1,376,628 - -1.2
1,376,628 - -0.6
1,376,628 - +1.9
1,376,628 - -0.9
1,376,628 - -0.8
1,376,716 + AO353_06170 0.16 -0.6
1,376,716 + AO353_06170 0.16 -0.5
1,376,716 + AO353_06170 0.16 -1.2
1,376,716 + AO353_06170 0.16 -0.1
1,376,716 + AO353_06170 0.16 -0.1
1,376,716 + AO353_06170 0.16 -0.3
1,376,717 - AO353_06170 0.16 -0.8
1,376,717 - AO353_06170 0.16 +1.0
1,376,717 - AO353_06170 0.16 -1.3
1,376,717 - AO353_06170 0.16 +0.7
1,376,717 - AO353_06170 0.16 -0.9
1,376,717 - AO353_06170 0.16 +0.8
1,376,717 - AO353_06170 0.16 -1.0
1,376,717 - AO353_06170 0.16 +0.3
1,376,945 + AO353_06170 0.68 -0.6
1,376,945 + AO353_06170 0.68 +0.4
1,376,945 + AO353_06170 0.68 +0.4
1,376,945 + AO353_06170 0.68 -1.4
1,376,945 + AO353_06170 0.68 +0.3
1,376,945 + AO353_06170 0.68 +0.3
1,376,945 + AO353_06170 0.68 +0.7
1,376,946 - AO353_06170 0.68 -0.8
1,376,946 - AO353_06170 0.68 -0.8
1,376,946 - AO353_06170 0.68 -0.0
1,376,946 - AO353_06170 0.68 -0.6
1,376,946 - AO353_06170 0.68 +0.2
1,376,946 - AO353_06170 0.68 -1.2
1,376,946 - AO353_06170 0.68 -0.5
1,376,946 - AO353_06170 0.68 -0.7
1,377,085 + -1.1
1,377,085 + -1.8
1,377,085 + +0.6
1,377,085 + -1.4
1,377,086 - +0.4
1,377,086 - -1.3
1,377,199 - AO353_06175 0.12 -0.1
1,377,199 - AO353_06175 0.12 +0.1
1,377,205 - AO353_06175 0.13 +0.0
1,377,365 + AO353_06175 0.32 -0.3
1,377,365 + AO353_06175 0.32 -0.5
1,377,365 + +0.4
1,377,365 + AO353_06175 0.32 -0.1
1,377,366 - AO353_06175 0.32 +0.2
1,377,366 - AO353_06175 0.32 +2.9
1,377,366 - AO353_06175 0.32 -0.9
1,377,366 - AO353_06175 0.32 -0.8
1,377,560 + AO353_06175 0.55 -1.9
1,377,560 + AO353_06175 0.55 +0.0
1,377,560 + AO353_06175 0.55 -0.9
1,377,561 - AO353_06175 0.55 -0.8
1,377,689 + AO353_06175 0.70 -2.1
1,377,690 - AO353_06175 0.70 +0.5
1,377,690 - AO353_06175 0.70 -1.3
1,377,690 - AO353_06175 0.70 -0.7
1,377,690 - AO353_06175 0.70 +0.2
1,377,777 + AO353_06175 0.80 +0.3
1,377,777 + AO353_06175 0.80 -0.1
1,377,778 - AO353_06175 0.80 -1.1
1,377,831 - AO353_06175 0.86 -0.5
1,377,831 - AO353_06175 0.86 -0.4
1,377,868 + +0.9
1,377,868 + +0.5
1,378,027 + +0.0
1,378,028 - -0.4
1,378,028 - +1.9
1,378,028 - -0.6
1,378,035 + -0.5
1,378,035 + +0.6
1,378,035 + +1.1
1,378,035 + -0.9
1,378,036 - -1.3

Or see this region's nucleotide sequence