Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3903 and Shewana3_3904 are separated by 12 nucleotides Shewana3_3904 and argC are separated by 31 nucleotides argC and Shewana3_3906 are separated by 670 nucleotides
Shewana3_3903: Shewana3_3903 - ornithine carbamoyltransferase (RefSeq), at 4,683,831 to 4,684,736
_3903
Shewana3_3904: Shewana3_3904 - acetylglutamate kinase (RefSeq), at 4,684,749 to 4,685,531
_3904
Shewana3_3905: argC - N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq), at 4,685,563 to 4,686,543
argC
Shewana3_3906: Shewana3_3906 - phosphoenolpyruvate carboxylase (RefSeq), at 4,687,214 to 4,689,883
_3906
Position (kb) 4685
4686
4687 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4684.624 kb on - strand, within Shewana3_3903 at 4684.631 kb on + strand, within Shewana3_3903 at 4684.802 kb on + strand at 4684.846 kb on - strand, within Shewana3_3904 at 4685.758 kb on + strand, within argC at 4685.822 kb on - strand, within argC at 4685.874 kb on + strand, within argC at 4685.925 kb on - strand, within argC at 4686.022 kb on + strand, within argC at 4686.100 kb on - strand, within argC at 4686.132 kb on + strand, within argC at 4686.363 kb on - strand, within argC at 4686.385 kb on + strand, within argC at 4686.397 kb on + strand, within argC at 4686.442 kb on + strand, within argC at 4686.592 kb on - strand at 4686.813 kb on + strand at 4687.054 kb on - strand at 4687.158 kb on + strand at 4687.242 kb on - strand at 4687.286 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 4,684,624 - Shewana3_3903 0.88 -4.3 4,684,631 + Shewana3_3903 0.88 -1.7 4,684,802 + -2.9 4,684,846 - Shewana3_3904 0.12 -3.2 4,685,758 + argC Shewana3_3905 0.20 -0.9 4,685,822 - argC Shewana3_3905 0.26 -4.4 4,685,874 + argC Shewana3_3905 0.32 -4.4 4,685,925 - argC Shewana3_3905 0.37 -4.1 4,686,022 + argC Shewana3_3905 0.47 -3.9 4,686,100 - argC Shewana3_3905 0.55 -4.5 4,686,132 + argC Shewana3_3905 0.58 -3.0 4,686,363 - argC Shewana3_3905 0.82 -3.3 4,686,385 + argC Shewana3_3905 0.84 -2.2 4,686,397 + argC Shewana3_3905 0.85 -3.9 4,686,442 + argC Shewana3_3905 0.90 -4.6 4,686,592 - -0.4 4,686,813 + +0.3 4,687,054 - -0.0 4,687,158 + +0.4 4,687,242 - -2.9 4,687,286 - -2.6
Or see this region's nucleotide sequence