Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3902 and Shewana3_3903 are separated by 60 nucleotides Shewana3_3903 and Shewana3_3904 are separated by 12 nucleotides Shewana3_3904 and argC are separated by 31 nucleotides
Shewana3_3902: Shewana3_3902 - argininosuccinate synthase (RefSeq), at 4,682,547 to 4,683,770
_3902
Shewana3_3903: Shewana3_3903 - ornithine carbamoyltransferase (RefSeq), at 4,683,831 to 4,684,736
_3903
Shewana3_3904: Shewana3_3904 - acetylglutamate kinase (RefSeq), at 4,684,749 to 4,685,531
_3904
Shewana3_3905: argC - N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq), at 4,685,563 to 4,686,543
argC
Position (kb) 4684
4685
4686 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4683.846 kb on + strand at 4683.969 kb on - strand, within Shewana3_3903 at 4684.124 kb on + strand, within Shewana3_3903 at 4684.180 kb on - strand, within Shewana3_3903 at 4684.209 kb on - strand, within Shewana3_3903 at 4684.427 kb on - strand, within Shewana3_3903 at 4684.624 kb on - strand, within Shewana3_3903 at 4684.631 kb on + strand, within Shewana3_3903 at 4684.802 kb on + strand at 4684.846 kb on - strand, within Shewana3_3904 at 4685.758 kb on + strand, within argC at 4685.822 kb on - strand, within argC at 4685.874 kb on + strand, within argC at 4685.925 kb on - strand, within argC at 4686.022 kb on + strand, within argC at 4686.100 kb on - strand, within argC at 4686.132 kb on + strand, within argC at 4686.363 kb on - strand, within argC at 4686.385 kb on + strand, within argC at 4686.397 kb on + strand, within argC at 4686.442 kb on + strand, within argC
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 4,683,846 + -2.4 4,683,969 - Shewana3_3903 0.15 +2.1 4,684,124 + Shewana3_3903 0.32 -4.3 4,684,180 - Shewana3_3903 0.39 -3.8 4,684,209 - Shewana3_3903 0.42 -4.2 4,684,427 - Shewana3_3903 0.66 -2.1 4,684,624 - Shewana3_3903 0.88 -4.3 4,684,631 + Shewana3_3903 0.88 -1.7 4,684,802 + -2.9 4,684,846 - Shewana3_3904 0.12 -3.2 4,685,758 + argC Shewana3_3905 0.20 -0.9 4,685,822 - argC Shewana3_3905 0.26 -4.4 4,685,874 + argC Shewana3_3905 0.32 -4.4 4,685,925 - argC Shewana3_3905 0.37 -4.1 4,686,022 + argC Shewana3_3905 0.47 -3.9 4,686,100 - argC Shewana3_3905 0.55 -4.5 4,686,132 + argC Shewana3_3905 0.58 -3.0 4,686,363 - argC Shewana3_3905 0.82 -3.3 4,686,385 + argC Shewana3_3905 0.84 -2.2 4,686,397 + argC Shewana3_3905 0.85 -3.9 4,686,442 + argC Shewana3_3905 0.90 -4.6
Or see this region's nucleotide sequence