Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3800 and Shewana3_3801 are separated by 102 nucleotides Shewana3_3801 and Shewana3_3802 are separated by 35 nucleotides
Shewana3_3800: Shewana3_3800 - LysR family transcriptional regulator (RefSeq), at 4,564,982 to 4,565,878
_3800
Shewana3_3801: Shewana3_3801 - hypothetical protein (RefSeq), at 4,565,981 to 4,566,457
_3801
Shewana3_3802: Shewana3_3802 - hypothetical protein (RefSeq), at 4,566,493 to 4,568,448
_3802
Position (kb)
4565
4566
4567 Strain fitness (log2 ratio)
-1
0
1 at 4564.993 kb on - strand at 4565.065 kb on + strand at 4565.257 kb on - strand, within Shewana3_3800 at 4565.433 kb on - strand, within Shewana3_3800 at 4565.493 kb on + strand, within Shewana3_3800 at 4565.595 kb on + strand, within Shewana3_3800 at 4565.620 kb on + strand, within Shewana3_3800 at 4565.665 kb on + strand, within Shewana3_3800 at 4566.043 kb on + strand, within Shewana3_3801 at 4566.110 kb on + strand, within Shewana3_3801 at 4566.147 kb on - strand, within Shewana3_3801 at 4566.159 kb on - strand, within Shewana3_3801 at 4566.164 kb on - strand, within Shewana3_3801 at 4566.210 kb on + strand, within Shewana3_3801 at 4566.211 kb on + strand, within Shewana3_3801 at 4566.375 kb on - strand, within Shewana3_3801 at 4566.601 kb on + strand at 4566.601 kb on + strand at 4566.609 kb on - strand at 4566.609 kb on - strand at 4566.713 kb on - strand, within Shewana3_3802 at 4566.713 kb on - strand, within Shewana3_3802 at 4566.760 kb on + strand, within Shewana3_3802 at 4566.765 kb on + strand, within Shewana3_3802 at 4566.768 kb on - strand, within Shewana3_3802 at 4566.768 kb on - strand, within Shewana3_3802 at 4566.768 kb on - strand, within Shewana3_3802 at 4566.863 kb on + strand, within Shewana3_3802 at 4566.897 kb on + strand, within Shewana3_3802 at 4566.905 kb on - strand, within Shewana3_3802 at 4566.985 kb on - strand, within Shewana3_3802 at 4567.169 kb on - strand, within Shewana3_3802 at 4567.169 kb on - strand, within Shewana3_3802 at 4567.169 kb on - strand, within Shewana3_3802 at 4567.192 kb on + strand, within Shewana3_3802 at 4567.253 kb on - strand, within Shewana3_3802 at 4567.280 kb on + strand, within Shewana3_3802 at 4567.298 kb on - strand, within Shewana3_3802
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 4,564,993 - -1.0 4,565,065 + +1.6 4,565,257 - Shewana3_3800 0.31 -0.0 4,565,433 - Shewana3_3800 0.50 -0.8 4,565,493 + Shewana3_3800 0.57 +0.5 4,565,595 + Shewana3_3800 0.68 -0.1 4,565,620 + Shewana3_3800 0.71 -0.4 4,565,665 + Shewana3_3800 0.76 +0.2 4,566,043 + Shewana3_3801 0.13 +0.1 4,566,110 + Shewana3_3801 0.27 +0.4 4,566,147 - Shewana3_3801 0.35 +0.4 4,566,159 - Shewana3_3801 0.37 +0.7 4,566,164 - Shewana3_3801 0.38 -0.2 4,566,210 + Shewana3_3801 0.48 -0.1 4,566,211 + Shewana3_3801 0.48 -0.7 4,566,375 - Shewana3_3801 0.83 +1.0 4,566,601 + -1.2 4,566,601 + -0.4 4,566,609 - +0.2 4,566,609 - +0.5 4,566,713 - Shewana3_3802 0.11 +0.7 4,566,713 - Shewana3_3802 0.11 -0.6 4,566,760 + Shewana3_3802 0.14 -0.4 4,566,765 + Shewana3_3802 0.14 -1.5 4,566,768 - Shewana3_3802 0.14 +0.8 4,566,768 - Shewana3_3802 0.14 +0.7 4,566,768 - Shewana3_3802 0.14 -1.1 4,566,863 + Shewana3_3802 0.19 +0.1 4,566,897 + Shewana3_3802 0.21 +0.6 4,566,905 - Shewana3_3802 0.21 +0.7 4,566,985 - Shewana3_3802 0.25 -0.6 4,567,169 - Shewana3_3802 0.35 -0.0 4,567,169 - Shewana3_3802 0.35 +0.2 4,567,169 - Shewana3_3802 0.35 -0.6 4,567,192 + Shewana3_3802 0.36 +0.7 4,567,253 - Shewana3_3802 0.39 -0.1 4,567,280 + Shewana3_3802 0.40 +0.6 4,567,298 - Shewana3_3802 0.41 -0.0
Or see this region's nucleotide sequence