Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3697 and Shewana3_3698 are separated by 422 nucleotides Shewana3_3698 and Shewana3_3699 are separated by 144 nucleotides Shewana3_3699 and hslU are separated by 18 nucleotides
Shewana3_3697: Shewana3_3697 - two component LuxR family transcriptional regulator (RefSeq), at 4,438,771 to 4,439,376
_3697
Shewana3_3698: Shewana3_3698 - methylation site containing protein (RefSeq), at 4,439,799 to 4,440,377
_3698
Shewana3_3699: Shewana3_3699 - ATP-dependent protease peptidase subunit (RefSeq), at 4,440,522 to 4,441,046
_3699
Shewana3_3700: hslU - ATP-dependent protease ATP-binding subunit HslU (RefSeq), at 4,441,065 to 4,442,393
hslU
Position (kb)
4439
4440
4441 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4438.867 kb on + strand, within Shewana3_3697 at 4438.868 kb on + strand, within Shewana3_3697 at 4439.206 kb on + strand, within Shewana3_3697 at 4439.206 kb on + strand, within Shewana3_3697 at 4439.208 kb on - strand, within Shewana3_3697 at 4439.214 kb on - strand, within Shewana3_3697 at 4439.325 kb on - strand at 4439.363 kb on - strand at 4439.365 kb on + strand at 4439.370 kb on + strand at 4439.380 kb on + strand at 4439.542 kb on + strand at 4439.542 kb on + strand at 4439.643 kb on - strand at 4439.690 kb on - strand at 4439.779 kb on - strand at 4439.970 kb on + strand, within Shewana3_3698 at 4440.040 kb on + strand, within Shewana3_3698 at 4440.043 kb on + strand, within Shewana3_3698 at 4440.095 kb on - strand, within Shewana3_3698 at 4440.095 kb on - strand, within Shewana3_3698 at 4440.095 kb on - strand, within Shewana3_3698 at 4440.251 kb on + strand, within Shewana3_3698 at 4440.259 kb on - strand, within Shewana3_3698 at 4440.690 kb on - strand, within Shewana3_3699 at 4440.794 kb on + strand, within Shewana3_3699 at 4440.922 kb on + strand, within Shewana3_3699 at 4440.930 kb on - strand, within Shewana3_3699 at 4441.303 kb on + strand, within hslU
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 4,438,867 + Shewana3_3697 0.16 +0.9 4,438,868 + Shewana3_3697 0.16 +0.8 4,439,206 + Shewana3_3697 0.72 -3.5 4,439,206 + Shewana3_3697 0.72 +0.8 4,439,208 - Shewana3_3697 0.72 +1.3 4,439,214 - Shewana3_3697 0.73 -0.8 4,439,325 - +0.2 4,439,363 - +0.5 4,439,365 + -0.6 4,439,370 + -0.1 4,439,380 + +0.3 4,439,542 + -0.2 4,439,542 + -0.6 4,439,643 - -0.1 4,439,690 - -0.8 4,439,779 - +0.3 4,439,970 + Shewana3_3698 0.30 +0.0 4,440,040 + Shewana3_3698 0.42 -0.7 4,440,043 + Shewana3_3698 0.42 +0.0 4,440,095 - Shewana3_3698 0.51 -0.8 4,440,095 - Shewana3_3698 0.51 +0.1 4,440,095 - Shewana3_3698 0.51 -0.7 4,440,251 + Shewana3_3698 0.78 -1.5 4,440,259 - Shewana3_3698 0.79 -0.8 4,440,690 - Shewana3_3699 0.32 +1.3 4,440,794 + Shewana3_3699 0.52 -0.3 4,440,922 + Shewana3_3699 0.76 -0.4 4,440,930 - Shewana3_3699 0.78 +0.3 4,441,303 + hslU Shewana3_3700 0.18 +0.3
Or see this region's nucleotide sequence