Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3543 and Shewana3_3544 are separated by 85 nucleotides Shewana3_3544 and Shewana3_3545 are separated by 104 nucleotides
Shewana3_3543: Shewana3_3543 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 4,244,988 to 4,246,967
_3543
Shewana3_3544: Shewana3_3544 - cold-shock DNA-binding protein family protein (RefSeq), at 4,247,053 to 4,247,631
_3544
Shewana3_3545: Shewana3_3545 - hypothetical protein (RefSeq), at 4,247,736 to 4,252,655
_3545
Position (kb) 4247
4248 Strain fitness (log2 ratio) -1
0
1
2 at 4246.157 kb on + strand, within Shewana3_3543 at 4246.370 kb on + strand, within Shewana3_3543 at 4246.370 kb on + strand, within Shewana3_3543 at 4246.393 kb on - strand, within Shewana3_3543 at 4246.491 kb on - strand, within Shewana3_3543 at 4246.613 kb on + strand, within Shewana3_3543 at 4246.621 kb on - strand, within Shewana3_3543 at 4246.721 kb on + strand, within Shewana3_3543 at 4246.879 kb on - strand at 4247.006 kb on - strand at 4247.006 kb on - strand at 4247.050 kb on - strand at 4247.129 kb on - strand, within Shewana3_3544 at 4247.171 kb on + strand, within Shewana3_3544 at 4247.324 kb on + strand, within Shewana3_3544 at 4247.448 kb on + strand, within Shewana3_3544 at 4247.490 kb on - strand, within Shewana3_3544 at 4247.772 kb on - strand at 4247.786 kb on - strand at 4247.915 kb on + strand at 4248.073 kb on - strand at 4248.108 kb on + strand at 4248.182 kb on + strand at 4248.334 kb on - strand, within Shewana3_3545 at 4248.443 kb on + strand, within Shewana3_3545 at 4248.595 kb on + strand, within Shewana3_3545 at 4248.618 kb on + strand, within Shewana3_3545 at 4248.626 kb on - strand, within Shewana3_3545 at 4248.626 kb on - strand, within Shewana3_3545
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 4,246,157 + Shewana3_3543 0.59 -0.5 4,246,370 + Shewana3_3543 0.70 +0.2 4,246,370 + Shewana3_3543 0.70 +0.1 4,246,393 - Shewana3_3543 0.71 -0.7 4,246,491 - Shewana3_3543 0.76 +0.9 4,246,613 + Shewana3_3543 0.82 +0.3 4,246,621 - Shewana3_3543 0.82 -0.2 4,246,721 + Shewana3_3543 0.88 -0.3 4,246,879 - -0.3 4,247,006 - +0.5 4,247,006 - +1.0 4,247,050 - -1.3 4,247,129 - Shewana3_3544 0.13 -0.4 4,247,171 + Shewana3_3544 0.20 +1.0 4,247,324 + Shewana3_3544 0.47 +0.6 4,247,448 + Shewana3_3544 0.68 +0.4 4,247,490 - Shewana3_3544 0.75 +2.3 4,247,772 - +0.2 4,247,786 - -0.7 4,247,915 + +0.4 4,248,073 - +0.8 4,248,108 + +0.3 4,248,182 + -0.3 4,248,334 - Shewana3_3545 0.12 -1.0 4,248,443 + Shewana3_3545 0.14 +0.5 4,248,595 + Shewana3_3545 0.17 +0.5 4,248,618 + Shewana3_3545 0.18 +1.0 4,248,626 - Shewana3_3545 0.18 +1.0 4,248,626 - Shewana3_3545 0.18 -0.1
Or see this region's nucleotide sequence