Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3471 and Shewana3_3472 are separated by 281 nucleotides Shewana3_3472 and Shewana3_3473 are separated by 465 nucleotides
Shewana3_3471: Shewana3_3471 - putative signal transduction protein (RefSeq), at 4,162,800 to 4,163,528
_3471
Shewana3_3472: Shewana3_3472 - TonB-dependent siderophore receptor (RefSeq), at 4,163,810 to 4,165,771
_3472
Shewana3_3473: Shewana3_3473 - hypothetical protein (RefSeq), at 4,166,237 to 4,166,905
_3473
Position (kb) 4163
4164
4165
4166 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4162.894 kb on - strand, within Shewana3_3471 at 4163.068 kb on + strand, within Shewana3_3471 at 4163.093 kb on - strand, within Shewana3_3471 at 4163.116 kb on - strand, within Shewana3_3471 at 4163.133 kb on + strand, within Shewana3_3471 at 4163.320 kb on + strand, within Shewana3_3471 at 4163.535 kb on + strand at 4163.580 kb on + strand at 4163.645 kb on - strand at 4163.684 kb on - strand at 4163.771 kb on - strand at 4163.776 kb on - strand at 4163.781 kb on - strand at 4163.781 kb on - strand at 4163.819 kb on + strand at 4163.825 kb on - strand at 4163.846 kb on + strand at 4163.846 kb on + strand at 4163.914 kb on - strand at 4164.261 kb on + strand, within Shewana3_3472 at 4164.358 kb on + strand, within Shewana3_3472 at 4164.364 kb on - strand, within Shewana3_3472 at 4164.439 kb on - strand, within Shewana3_3472 at 4164.455 kb on - strand, within Shewana3_3472 at 4164.507 kb on - strand, within Shewana3_3472 at 4164.643 kb on + strand, within Shewana3_3472 at 4164.652 kb on - strand, within Shewana3_3472 at 4164.687 kb on - strand, within Shewana3_3472 at 4164.712 kb on + strand, within Shewana3_3472 at 4164.720 kb on + strand, within Shewana3_3472 at 4164.857 kb on + strand, within Shewana3_3472 at 4164.869 kb on + strand, within Shewana3_3472 at 4164.877 kb on - strand, within Shewana3_3472 at 4164.887 kb on + strand, within Shewana3_3472 at 4164.923 kb on - strand, within Shewana3_3472 at 4164.951 kb on + strand, within Shewana3_3472 at 4164.956 kb on - strand, within Shewana3_3472 at 4165.012 kb on + strand, within Shewana3_3472 at 4165.012 kb on + strand, within Shewana3_3472 at 4165.020 kb on - strand, within Shewana3_3472 at 4165.020 kb on - strand, within Shewana3_3472 at 4165.020 kb on - strand, within Shewana3_3472 at 4165.114 kb on - strand, within Shewana3_3472 at 4165.114 kb on - strand, within Shewana3_3472 at 4165.114 kb on - strand, within Shewana3_3472 at 4165.277 kb on - strand, within Shewana3_3472 at 4165.334 kb on - strand, within Shewana3_3472 at 4165.344 kb on - strand, within Shewana3_3472 at 4165.396 kb on + strand, within Shewana3_3472 at 4165.500 kb on + strand, within Shewana3_3472 at 4165.627 kb on - strand at 4165.927 kb on + strand at 4166.015 kb on + strand at 4166.162 kb on + strand at 4166.170 kb on - strand at 4166.318 kb on - strand, within Shewana3_3473 at 4166.504 kb on + strand, within Shewana3_3473 at 4166.547 kb on + strand, within Shewana3_3473 at 4166.616 kb on - strand, within Shewana3_3473 at 4166.622 kb on + strand, within Shewana3_3473
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 4,162,894 - Shewana3_3471 0.13 -0.2 4,163,068 + Shewana3_3471 0.37 +0.5 4,163,093 - Shewana3_3471 0.40 +0.1 4,163,116 - Shewana3_3471 0.43 +0.3 4,163,133 + Shewana3_3471 0.46 +0.4 4,163,320 + Shewana3_3471 0.71 -0.1 4,163,535 + +0.1 4,163,580 + -1.4 4,163,645 - +0.1 4,163,684 - +0.2 4,163,771 - -1.1 4,163,776 - -0.3 4,163,781 - +0.0 4,163,781 - +0.2 4,163,819 + +0.3 4,163,825 - -0.1 4,163,846 + -1.4 4,163,846 + -0.5 4,163,914 - -0.5 4,164,261 + Shewana3_3472 0.23 -1.0 4,164,358 + Shewana3_3472 0.28 +1.8 4,164,364 - Shewana3_3472 0.28 -1.2 4,164,439 - Shewana3_3472 0.32 -0.8 4,164,455 - Shewana3_3472 0.33 -0.9 4,164,507 - Shewana3_3472 0.36 -1.7 4,164,643 + Shewana3_3472 0.42 -0.6 4,164,652 - Shewana3_3472 0.43 -0.4 4,164,687 - Shewana3_3472 0.45 -2.1 4,164,712 + Shewana3_3472 0.46 -2.0 4,164,720 + Shewana3_3472 0.46 -1.2 4,164,857 + Shewana3_3472 0.53 -1.1 4,164,869 + Shewana3_3472 0.54 +0.0 4,164,877 - Shewana3_3472 0.54 -2.4 4,164,887 + Shewana3_3472 0.55 -1.4 4,164,923 - Shewana3_3472 0.57 -2.3 4,164,951 + Shewana3_3472 0.58 -1.8 4,164,956 - Shewana3_3472 0.58 -0.7 4,165,012 + Shewana3_3472 0.61 -1.4 4,165,012 + Shewana3_3472 0.61 -0.8 4,165,020 - Shewana3_3472 0.62 -1.5 4,165,020 - Shewana3_3472 0.62 -2.2 4,165,020 - Shewana3_3472 0.62 -2.3 4,165,114 - Shewana3_3472 0.66 -2.2 4,165,114 - Shewana3_3472 0.66 -2.4 4,165,114 - Shewana3_3472 0.66 -1.7 4,165,277 - Shewana3_3472 0.75 -0.6 4,165,334 - Shewana3_3472 0.78 -1.4 4,165,344 - Shewana3_3472 0.78 -0.8 4,165,396 + Shewana3_3472 0.81 -1.7 4,165,500 + Shewana3_3472 0.86 -1.1 4,165,627 - -2.7 4,165,927 + -1.9 4,166,015 + -1.2 4,166,162 + -0.0 4,166,170 - -0.6 4,166,318 - Shewana3_3473 0.12 +0.5 4,166,504 + Shewana3_3473 0.40 +0.1 4,166,547 + Shewana3_3473 0.46 -1.4 4,166,616 - Shewana3_3473 0.57 +0.3 4,166,622 + Shewana3_3473 0.58 +0.1
Or see this region's nucleotide sequence