Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3416
Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Sucrose 5 mM |
---|---|---|---|---|---|
remove | |||||
4,085,316 | + | -1.0 | |||
4,085,324 | - | -0.4 | |||
4,085,445 | + | -0.7 | |||
4,085,447 | - | +0.3 | |||
4,085,447 | - | +0.2 | |||
4,085,453 | - | -1.0 | |||
4,085,488 | - | -1.2 | |||
4,085,590 | - | Shewana3_3415 | 0.23 | -0.8 | |
4,085,798 | + | Shewana3_3415 | 0.58 | -0.0 | |
4,085,803 | + | Shewana3_3415 | 0.58 | +0.2 | |
4,085,832 | + | Shewana3_3415 | 0.63 | +0.3 | |
4,085,845 | - | Shewana3_3415 | 0.65 | -1.1 | |
4,086,016 | - | -0.6 | |||
4,086,150 | - | -3.4 | |||
4,086,682 | + | Shewana3_3416 | 0.38 | -3.2 | |
4,086,965 | + | Shewana3_3416 | 0.61 | -4.1 | |
4,086,975 | + | Shewana3_3416 | 0.62 | -3.7 | |
4,086,989 | - | Shewana3_3416 | 0.63 | -5.5 | |
4,087,132 | - | Shewana3_3416 | 0.75 | -1.6 | |
4,087,297 | + | Shewana3_3416 | 0.88 | -3.0 | |
4,087,536 | + | -0.9 |
Or see this region's nucleotide sequence