Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3410
Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Sucrose 5 mM |
---|---|---|---|---|---|
remove | |||||
4,078,547 | - | -0.4 | |||
4,078,547 | - | +0.7 | |||
4,078,547 | - | +0.1 | |||
4,078,547 | - | -0.9 | |||
4,078,552 | - | +0.7 | |||
4,078,665 | + | +0.1 | |||
4,079,051 | - | Shewana3_3410 | 0.52 | +1.0 | |
4,079,370 | - | -0.2 | |||
4,079,370 | - | +0.5 | |||
4,079,530 | + | -0.3 | |||
4,079,656 | - | Shewana3_3411 | 0.12 | +0.1 | |
4,079,682 | + | Shewana3_3411 | 0.13 | -0.5 | |
4,079,894 | - | Shewana3_3411 | 0.21 | +0.2 | |
4,080,022 | + | Shewana3_3411 | 0.26 | +0.3 | |
4,080,057 | + | Shewana3_3411 | 0.28 | -0.4 | |
4,080,065 | - | Shewana3_3411 | 0.28 | +0.4 | |
4,080,065 | - | Shewana3_3411 | 0.28 | -1.1 | |
4,080,171 | - | Shewana3_3411 | 0.32 | +0.1 | |
4,080,253 | - | Shewana3_3411 | 0.35 | +0.7 |
Or see this region's nucleotide sequence