Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3347
Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Sucrose 5 mM |
---|---|---|---|---|---|
remove | |||||
4,014,415 | - | Shewana3_3345 | 0.28 | +0.9 | |
4,014,566 | - | Shewana3_3345 | 0.57 | +0.6 | |
4,014,920 | + | Shewana3_3346 | 0.11 | +0.6 | |
4,015,132 | + | Shewana3_3346 | 0.49 | +0.3 | |
4,015,151 | + | Shewana3_3346 | 0.53 | +0.1 | |
4,015,327 | - | Shewana3_3346 | 0.85 | +1.2 | |
4,015,589 | + | Shewana3_3347 | 0.25 | -0.4 | |
4,015,601 | + | Shewana3_3347 | 0.27 | +0.8 | |
4,015,756 | - | Shewana3_3347 | 0.47 | -0.2 | |
4,015,999 | + | Shewana3_3347 | 0.80 | +0.1 | |
4,016,007 | - | Shewana3_3347 | 0.81 | -0.2 | |
4,016,426 | + | -0.0 | |||
4,016,534 | + | Shewana3_3348 | 0.15 | -0.7 | |
4,016,670 | - | Shewana3_3348 | 0.24 | +0.1 | |
4,016,685 | + | Shewana3_3348 | 0.25 | -0.1 | |
4,016,716 | - | Shewana3_3348 | 0.27 | +0.5 | |
4,016,749 | + | Shewana3_3348 | 0.29 | +0.9 | |
4,016,844 | + | Shewana3_3348 | 0.36 | -0.4 |
Or see this region's nucleotide sequence