Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2972 and Shewana3_2973 are separated by 41 nucleotides Shewana3_2973 and Shewana3_2974 are separated by 77 nucleotides Shewana3_2974 and Shewana3_2975 are separated by 68 nucleotides
Shewana3_2972: Shewana3_2972 - hypothetical protein (RefSeq), at 3,572,642 to 3,573,916
_2972
Shewana3_2973: Shewana3_2973 - YheO domain-containing protein (RefSeq), at 3,573,958 to 3,574,638
_2973
Shewana3_2974: Shewana3_2974 - hypothetical protein (RefSeq), at 3,574,716 to 3,576,446
_2974
Shewana3_2975: Shewana3_2975 - hypothetical protein (RefSeq), at 3,576,515 to 3,577,429
_2975
Position (kb)
3574
3575
3576
3577 Strain fitness (log2 ratio)
-2
-1
0
1 at 3573.971 kb on + strand at 3574.070 kb on + strand, within Shewana3_2973 at 3574.070 kb on + strand, within Shewana3_2973 at 3574.086 kb on + strand, within Shewana3_2973 at 3574.661 kb on + strand at 3574.661 kb on + strand at 3574.760 kb on - strand at 3574.824 kb on + strand at 3574.911 kb on + strand, within Shewana3_2974 at 3574.919 kb on - strand, within Shewana3_2974 at 3575.022 kb on + strand, within Shewana3_2974 at 3575.347 kb on + strand, within Shewana3_2974 at 3575.473 kb on + strand, within Shewana3_2974 at 3575.473 kb on + strand, within Shewana3_2974 at 3575.481 kb on - strand, within Shewana3_2974 at 3575.481 kb on - strand, within Shewana3_2974 at 3575.481 kb on - strand, within Shewana3_2974 at 3575.527 kb on + strand, within Shewana3_2974 at 3575.567 kb on - strand, within Shewana3_2974 at 3575.576 kb on + strand, within Shewana3_2974 at 3575.618 kb on + strand, within Shewana3_2974 at 3575.708 kb on - strand, within Shewana3_2974 at 3575.822 kb on + strand, within Shewana3_2974 at 3575.830 kb on - strand, within Shewana3_2974 at 3576.209 kb on - strand, within Shewana3_2974 at 3576.316 kb on + strand at 3576.324 kb on - strand at 3576.324 kb on - strand at 3576.324 kb on - strand at 3576.463 kb on + strand at 3576.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 3,573,971 + -0.3 3,574,070 + Shewana3_2973 0.16 +0.1 3,574,070 + Shewana3_2973 0.16 +0.9 3,574,086 + Shewana3_2973 0.19 -0.2 3,574,661 + -0.7 3,574,661 + -0.6 3,574,760 - +0.8 3,574,824 + +0.4 3,574,911 + Shewana3_2974 0.11 -1.0 3,574,919 - Shewana3_2974 0.12 -0.1 3,575,022 + Shewana3_2974 0.18 +0.6 3,575,347 + Shewana3_2974 0.36 -0.9 3,575,473 + Shewana3_2974 0.44 +0.1 3,575,473 + Shewana3_2974 0.44 +0.4 3,575,481 - Shewana3_2974 0.44 -0.1 3,575,481 - Shewana3_2974 0.44 +0.2 3,575,481 - Shewana3_2974 0.44 +0.3 3,575,527 + Shewana3_2974 0.47 -1.2 3,575,567 - Shewana3_2974 0.49 -0.7 3,575,576 + Shewana3_2974 0.50 -1.1 3,575,618 + Shewana3_2974 0.52 -0.7 3,575,708 - Shewana3_2974 0.57 -1.9 3,575,822 + Shewana3_2974 0.64 +0.6 3,575,830 - Shewana3_2974 0.64 -0.2 3,576,209 - Shewana3_2974 0.86 +0.1 3,576,316 + -0.1 3,576,324 - -0.5 3,576,324 - -0.5 3,576,324 - -0.7 3,576,463 + +0.6 3,576,493 - -0.4
Or see this region's nucleotide sequence