Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2849 and Shewana3_2850 are separated by 253 nucleotides Shewana3_2850 and Shewana3_2851 are separated by 271 nucleotides Shewana3_2851 and Shewana3_2852 are separated by 164 nucleotides
Shewana3_2849: Shewana3_2849 - sigma-54 dependent trancsriptional regulator (RefSeq), at 3,410,403 to 3,411,812
_2849
Shewana3_2850: Shewana3_2850 - hypothetical protein (RefSeq), at 3,412,066 to 3,412,542
_2850
Shewana3_2851: Shewana3_2851 - transport-associated (RefSeq), at 3,412,814 to 3,413,362
_2851
Shewana3_2852: Shewana3_2852 - hypothetical protein (RefSeq), at 3,413,527 to 3,413,937
_2852
Position (kb)
3412
3413 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3411.182 kb on - strand, within Shewana3_2849 at 3411.284 kb on - strand, within Shewana3_2849 at 3411.357 kb on - strand, within Shewana3_2849 at 3411.474 kb on + strand, within Shewana3_2849 at 3411.687 kb on - strand at 3411.750 kb on - strand at 3411.760 kb on - strand at 3411.824 kb on - strand at 3411.851 kb on - strand at 3412.049 kb on - strand at 3412.395 kb on - strand, within Shewana3_2850 at 3412.423 kb on - strand, within Shewana3_2850 at 3412.459 kb on + strand, within Shewana3_2850 at 3412.514 kb on + strand at 3412.514 kb on + strand at 3412.514 kb on + strand at 3412.830 kb on + strand at 3412.888 kb on + strand, within Shewana3_2851 at 3412.888 kb on + strand, within Shewana3_2851 at 3412.960 kb on + strand, within Shewana3_2851 at 3412.961 kb on - strand, within Shewana3_2851 at 3413.049 kb on + strand, within Shewana3_2851 at 3413.249 kb on + strand, within Shewana3_2851 at 3413.299 kb on - strand, within Shewana3_2851 at 3413.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 3,411,182 - Shewana3_2849 0.55 -0.1 3,411,284 - Shewana3_2849 0.62 -0.1 3,411,357 - Shewana3_2849 0.68 -0.7 3,411,474 + Shewana3_2849 0.76 +0.6 3,411,687 - +0.5 3,411,750 - +0.1 3,411,760 - +0.1 3,411,824 - +0.3 3,411,851 - +0.3 3,412,049 - -0.8 3,412,395 - Shewana3_2850 0.69 -0.4 3,412,423 - Shewana3_2850 0.75 -1.7 3,412,459 + Shewana3_2850 0.82 -0.8 3,412,514 + -4.4 3,412,514 + +0.2 3,412,514 + -1.1 3,412,830 + -1.3 3,412,888 + Shewana3_2851 0.13 +1.0 3,412,888 + Shewana3_2851 0.13 -0.3 3,412,960 + Shewana3_2851 0.27 +0.9 3,412,961 - Shewana3_2851 0.27 +0.5 3,413,049 + Shewana3_2851 0.43 +0.1 3,413,249 + Shewana3_2851 0.79 +0.3 3,413,299 - Shewana3_2851 0.88 -0.3 3,413,373 - -0.0
Or see this region's nucleotide sequence