Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2826

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2824 and Shewana3_2825 overlap by 14 nucleotidesShewana3_2825 and Shewana3_2826 are separated by 131 nucleotidesShewana3_2826 and Shewana3_2827 overlap by 4 nucleotides Shewana3_2824: Shewana3_2824 - tRNA pseudouridine synthase C (RefSeq), at 3,373,305 to 3,374,159 _2824 Shewana3_2825: Shewana3_2825 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 3,374,146 to 3,374,481 _2825 Shewana3_2826: Shewana3_2826 - hypothetical protein (RefSeq), at 3,374,613 to 3,375,626 _2826 Shewana3_2827: Shewana3_2827 - hypothetical protein (RefSeq), at 3,375,623 to 3,376,009 _2827 Position (kb) 3374 3375 3376Strain fitness (log2 ratio) -1 0 1at 3373.744 kb on + strand, within Shewana3_2824at 3373.773 kb on + strand, within Shewana3_2824at 3373.781 kb on + strand, within Shewana3_2824at 3373.781 kb on - strand, within Shewana3_2824at 3373.991 kb on + strand, within Shewana3_2824at 3373.991 kb on + strand, within Shewana3_2824at 3374.046 kb on - strand, within Shewana3_2824at 3374.080 kb on - strandat 3374.080 kb on - strandat 3374.199 kb on - strand, within Shewana3_2825at 3374.224 kb on + strand, within Shewana3_2825at 3374.243 kb on - strand, within Shewana3_2825at 3374.289 kb on - strand, within Shewana3_2825at 3374.290 kb on - strand, within Shewana3_2825at 3374.338 kb on - strand, within Shewana3_2825at 3374.396 kb on + strand, within Shewana3_2825at 3374.486 kb on - strandat 3374.755 kb on - strand, within Shewana3_2826at 3374.765 kb on - strand, within Shewana3_2826at 3374.842 kb on + strand, within Shewana3_2826at 3374.891 kb on + strand, within Shewana3_2826at 3375.007 kb on - strand, within Shewana3_2826at 3375.098 kb on + strand, within Shewana3_2826at 3375.117 kb on + strand, within Shewana3_2826at 3375.201 kb on + strand, within Shewana3_2826at 3375.388 kb on + strand, within Shewana3_2826at 3375.398 kb on + strand, within Shewana3_2826at 3375.411 kb on + strand, within Shewana3_2826at 3375.433 kb on + strand, within Shewana3_2826at 3375.433 kb on + strand, within Shewana3_2826at 3375.434 kb on - strand, within Shewana3_2826at 3375.458 kb on + strand, within Shewana3_2826at 3375.605 kb on + strandat 3375.698 kb on + strand, within Shewana3_2827at 3376.079 kb on + strandat 3376.087 kb on - strandat 3376.164 kb on + strandat 3376.170 kb on - strandat 3376.385 kb on - strandat 3376.414 kb on + strandat 3376.422 kb on - strandat 3376.466 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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3,373,744 + Shewana3_2824 0.51 +0.4
3,373,773 + Shewana3_2824 0.55 -0.2
3,373,781 + Shewana3_2824 0.56 -0.8
3,373,781 - Shewana3_2824 0.56 +0.2
3,373,991 + Shewana3_2824 0.80 +0.2
3,373,991 + Shewana3_2824 0.80 +0.5
3,374,046 - Shewana3_2824 0.87 +1.5
3,374,080 - -0.0
3,374,080 - -0.2
3,374,199 - Shewana3_2825 0.16 -0.3
3,374,224 + Shewana3_2825 0.23 +0.7
3,374,243 - Shewana3_2825 0.29 +0.1
3,374,289 - Shewana3_2825 0.43 -0.8
3,374,290 - Shewana3_2825 0.43 -0.7
3,374,338 - Shewana3_2825 0.57 -1.3
3,374,396 + Shewana3_2825 0.74 +0.0
3,374,486 - -0.0
3,374,755 - Shewana3_2826 0.14 -0.6
3,374,765 - Shewana3_2826 0.15 -1.2
3,374,842 + Shewana3_2826 0.23 -0.4
3,374,891 + Shewana3_2826 0.27 +0.2
3,375,007 - Shewana3_2826 0.39 +0.7
3,375,098 + Shewana3_2826 0.48 +0.5
3,375,117 + Shewana3_2826 0.50 -0.2
3,375,201 + Shewana3_2826 0.58 +0.9
3,375,388 + Shewana3_2826 0.76 +0.7
3,375,398 + Shewana3_2826 0.77 +0.3
3,375,411 + Shewana3_2826 0.79 +0.2
3,375,433 + Shewana3_2826 0.81 +0.3
3,375,433 + Shewana3_2826 0.81 -0.6
3,375,434 - Shewana3_2826 0.81 -0.5
3,375,458 + Shewana3_2826 0.83 +0.1
3,375,605 + +0.4
3,375,698 + Shewana3_2827 0.19 -1.3
3,376,079 + -0.2
3,376,087 - +0.1
3,376,164 + +0.3
3,376,170 - +0.3
3,376,385 - +0.6
3,376,414 + -1.1
3,376,422 - +0.0
3,376,466 + -0.6

Or see this region's nucleotide sequence