Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_R0115 and Shewana3_2816 are separated by 94 nucleotides Shewana3_2816 and Shewana3_2817 are separated by 68 nucleotides Shewana3_2817 and dapD are separated by 18 nucleotides
Shewana3_R0115: Shewana3_R0115 - t44 RNA (NCBI), at 3,362,537 to 3,362,688
_R0115
Shewana3_2816: Shewana3_2816 - methionine aminopeptidase (RefSeq), at 3,362,783 to 3,363,619
_2816
Shewana3_2817: Shewana3_2817 - PII uridylyl-transferase (RefSeq), at 3,363,688 to 3,366,273
_2817
Shewana3_2818: dapD - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (RefSeq), at 3,366,292 to 3,367,116
dapD
Position (kb)
3363
3364
3365
3366
3367 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3362.841 kb on - strand at 3362.870 kb on + strand, within Shewana3_2816 at 3362.923 kb on - strand, within Shewana3_2816 at 3362.942 kb on - strand, within Shewana3_2816 at 3363.218 kb on - strand, within Shewana3_2816 at 3363.244 kb on + strand, within Shewana3_2816 at 3363.407 kb on + strand, within Shewana3_2816 at 3363.440 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.478 kb on - strand, within Shewana3_2816 at 3363.478 kb on - strand, within Shewana3_2816 at 3363.569 kb on - strand at 3363.620 kb on + strand at 3363.635 kb on - strand at 3363.698 kb on - strand at 3363.902 kb on - strand at 3364.040 kb on + strand, within Shewana3_2817 at 3364.048 kb on - strand, within Shewana3_2817 at 3364.417 kb on - strand, within Shewana3_2817 at 3364.463 kb on - strand, within Shewana3_2817 at 3364.470 kb on - strand, within Shewana3_2817 at 3364.556 kb on + strand, within Shewana3_2817 at 3364.590 kb on + strand, within Shewana3_2817 at 3364.611 kb on - strand, within Shewana3_2817 at 3364.809 kb on + strand, within Shewana3_2817 at 3364.951 kb on + strand, within Shewana3_2817 at 3365.006 kb on - strand, within Shewana3_2817 at 3365.013 kb on + strand, within Shewana3_2817 at 3365.059 kb on + strand, within Shewana3_2817 at 3365.066 kb on + strand, within Shewana3_2817 at 3365.568 kb on - strand, within Shewana3_2817 at 3365.591 kb on - strand, within Shewana3_2817 at 3365.659 kb on - strand, within Shewana3_2817 at 3365.733 kb on + strand, within Shewana3_2817 at 3365.738 kb on + strand, within Shewana3_2817 at 3366.023 kb on - strand at 3366.023 kb on - strand at 3367.265 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 3,362,841 - -0.3 3,362,870 + Shewana3_2816 0.10 -0.2 3,362,923 - Shewana3_2816 0.17 +0.0 3,362,942 - Shewana3_2816 0.19 -0.1 3,363,218 - Shewana3_2816 0.52 -1.2 3,363,244 + Shewana3_2816 0.55 -1.1 3,363,407 + Shewana3_2816 0.75 +0.5 3,363,440 + Shewana3_2816 0.78 -1.3 3,363,470 + Shewana3_2816 0.82 -1.5 3,363,470 + Shewana3_2816 0.82 +1.3 3,363,470 + Shewana3_2816 0.82 -0.0 3,363,470 + Shewana3_2816 0.82 -0.0 3,363,470 + Shewana3_2816 0.82 -2.7 3,363,470 + Shewana3_2816 0.82 -0.2 3,363,470 + Shewana3_2816 0.82 -0.0 3,363,478 - Shewana3_2816 0.83 -2.9 3,363,478 - Shewana3_2816 0.83 -1.3 3,363,569 - -1.6 3,363,620 + -0.4 3,363,635 - -2.1 3,363,698 - -2.7 3,363,902 - -2.9 3,364,040 + Shewana3_2817 0.14 -4.3 3,364,048 - Shewana3_2817 0.14 -5.3 3,364,417 - Shewana3_2817 0.28 -2.2 3,364,463 - Shewana3_2817 0.30 -4.8 3,364,470 - Shewana3_2817 0.30 -1.1 3,364,556 + Shewana3_2817 0.34 -1.6 3,364,590 + Shewana3_2817 0.35 -3.6 3,364,611 - Shewana3_2817 0.36 -0.3 3,364,809 + Shewana3_2817 0.43 -0.8 3,364,951 + Shewana3_2817 0.49 -2.2 3,365,006 - Shewana3_2817 0.51 -3.8 3,365,013 + Shewana3_2817 0.51 -3.5 3,365,059 + Shewana3_2817 0.53 -4.0 3,365,066 + Shewana3_2817 0.53 -4.0 3,365,568 - Shewana3_2817 0.73 -2.1 3,365,591 - Shewana3_2817 0.74 -4.7 3,365,659 - Shewana3_2817 0.76 -2.6 3,365,733 + Shewana3_2817 0.79 -5.0 3,365,738 + Shewana3_2817 0.79 -3.0 3,366,023 - -5.2 3,366,023 - -3.0 3,367,265 - -0.3
Or see this region's nucleotide sequence