Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2560

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2559 and Shewana3_2560 are separated by 104 nucleotidesShewana3_2560 and Shewana3_2561 are separated by 9 nucleotides Shewana3_2559: Shewana3_2559 - [Acyl-carrier-protein] S-malonyltransferase (RefSeq), at 3,061,140 to 3,062,066 _2559 Shewana3_2560: Shewana3_2560 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 3,062,171 to 3,063,130 _2560 Shewana3_2561: Shewana3_2561 - putative glycerol-3-phosphate acyltransferase PlsX (RefSeq), at 3,063,140 to 3,064,168 _2561 Position (kb) 3062 3063 3064Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3061.178 kb on - strandat 3062.309 kb on - strand, within Shewana3_2560at 3062.652 kb on - strand, within Shewana3_2560at 3062.696 kb on - strandat 3062.785 kb on - strand, within Shewana3_2560at 3062.955 kb on - strand, within Shewana3_2560at 3063.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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3,061,178 - -1.0
3,062,309 - Shewana3_2560 0.14 -3.4
3,062,652 - Shewana3_2560 0.50 -3.5
3,062,696 - -2.2
3,062,785 - Shewana3_2560 0.64 -3.7
3,062,955 - Shewana3_2560 0.82 -3.8
3,063,091 - -3.6

Or see this region's nucleotide sequence