Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2481 and Shewana3_2482 are separated by 113 nucleotides Shewana3_2482 and Shewana3_2483 are separated by 196 nucleotides
Shewana3_2481: Shewana3_2481 - homogentisate 1,2-dioxygenase (RefSeq), at 2,966,926 to 2,968,086
_2481
Shewana3_2482: Shewana3_2482 - 4-hydroxyphenylpyruvate dioxygenase (RefSeq), at 2,968,200 to 2,969,240
_2482
Shewana3_2483: Shewana3_2483 - diguanylate cyclase (RefSeq), at 2,969,437 to 2,970,840
_2483
Position (kb)
2968
2969
2970 Strain fitness (log2 ratio)
-1
0
1
2 at 2967.365 kb on + strand, within Shewana3_2481 at 2967.391 kb on - strand, within Shewana3_2481 at 2967.614 kb on + strand, within Shewana3_2481 at 2967.636 kb on - strand, within Shewana3_2481 at 2967.658 kb on + strand, within Shewana3_2481 at 2967.750 kb on + strand, within Shewana3_2481 at 2967.752 kb on + strand, within Shewana3_2481 at 2967.760 kb on - strand, within Shewana3_2481 at 2967.852 kb on + strand, within Shewana3_2481 at 2967.860 kb on - strand, within Shewana3_2481 at 2968.154 kb on + strand at 2968.482 kb on + strand, within Shewana3_2482 at 2968.526 kb on + strand, within Shewana3_2482 at 2968.534 kb on - strand, within Shewana3_2482 at 2968.548 kb on + strand, within Shewana3_2482 at 2968.800 kb on - strand, within Shewana3_2482 at 2968.802 kb on + strand, within Shewana3_2482 at 2968.842 kb on + strand, within Shewana3_2482 at 2968.859 kb on + strand, within Shewana3_2482 at 2969.055 kb on - strand, within Shewana3_2482 at 2969.644 kb on - strand, within Shewana3_2483 at 2969.682 kb on + strand, within Shewana3_2483 at 2969.746 kb on + strand, within Shewana3_2483 at 2969.846 kb on - strand, within Shewana3_2483 at 2969.929 kb on + strand, within Shewana3_2483 at 2969.958 kb on + strand, within Shewana3_2483 at 2969.966 kb on - strand, within Shewana3_2483 at 2970.007 kb on + strand, within Shewana3_2483 at 2970.067 kb on + strand, within Shewana3_2483 at 2970.094 kb on - strand, within Shewana3_2483 at 2970.115 kb on - strand, within Shewana3_2483 at 2970.146 kb on - strand, within Shewana3_2483
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 2,967,365 + Shewana3_2481 0.38 +0.4 2,967,391 - Shewana3_2481 0.40 +0.2 2,967,614 + Shewana3_2481 0.59 +0.5 2,967,636 - Shewana3_2481 0.61 +0.8 2,967,658 + Shewana3_2481 0.63 -0.7 2,967,750 + Shewana3_2481 0.71 -0.4 2,967,752 + Shewana3_2481 0.71 -1.2 2,967,760 - Shewana3_2481 0.72 -0.3 2,967,852 + Shewana3_2481 0.80 -0.7 2,967,860 - Shewana3_2481 0.80 +0.4 2,968,154 + +0.3 2,968,482 + Shewana3_2482 0.27 -0.4 2,968,526 + Shewana3_2482 0.31 -1.3 2,968,534 - Shewana3_2482 0.32 -0.8 2,968,548 + Shewana3_2482 0.33 +1.8 2,968,800 - Shewana3_2482 0.58 -0.2 2,968,802 + Shewana3_2482 0.58 -0.7 2,968,842 + Shewana3_2482 0.62 +0.9 2,968,859 + Shewana3_2482 0.63 -1.0 2,969,055 - Shewana3_2482 0.82 +0.1 2,969,644 - Shewana3_2483 0.15 -0.9 2,969,682 + Shewana3_2483 0.17 +1.7 2,969,746 + Shewana3_2483 0.22 -0.8 2,969,846 - Shewana3_2483 0.29 -0.0 2,969,929 + Shewana3_2483 0.35 -0.1 2,969,958 + Shewana3_2483 0.37 +0.2 2,969,966 - Shewana3_2483 0.38 -0.3 2,970,007 + Shewana3_2483 0.41 -0.3 2,970,067 + Shewana3_2483 0.45 +0.9 2,970,094 - Shewana3_2483 0.47 -0.6 2,970,115 - Shewana3_2483 0.48 +0.9 2,970,146 - Shewana3_2483 0.50 -0.5
Or see this region's nucleotide sequence