Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2414 and Shewana3_2415 are separated by 112 nucleotides Shewana3_2415 and Shewana3_2416 are separated by 9 nucleotides Shewana3_2416 and Shewana3_2417 are separated by 324 nucleotides
Shewana3_2414: Shewana3_2414 - cystathionine beta-lyase (RefSeq), at 2,895,136 to 2,896,335
_2414
Shewana3_2415: Shewana3_2415 - CreA family protein (RefSeq), at 2,896,448 to 2,896,963
_2415
Shewana3_2416: Shewana3_2416 - putative chaperone (RefSeq), at 2,896,973 to 2,898,427
_2416
Shewana3_2417: Shewana3_2417 - polyphosphate kinase (RefSeq), at 2,898,752 to 2,900,914
_2417
Position (kb)
2896
2897
2898
2899 Strain fitness (log2 ratio)
-1
0
1
2 at 2896.302 kb on + strand at 2896.367 kb on + strand at 2896.489 kb on + strand at 2896.996 kb on - strand at 2897.086 kb on + strand at 2897.551 kb on + strand, within Shewana3_2416 at 2897.607 kb on + strand, within Shewana3_2416 at 2897.659 kb on + strand, within Shewana3_2416 at 2897.780 kb on - strand, within Shewana3_2416 at 2897.792 kb on - strand, within Shewana3_2416 at 2897.954 kb on - strand, within Shewana3_2416 at 2898.027 kb on - strand, within Shewana3_2416 at 2898.161 kb on - strand, within Shewana3_2416 at 2898.221 kb on - strand, within Shewana3_2416 at 2898.350 kb on + strand at 2898.358 kb on - strand at 2898.603 kb on - strand at 2898.716 kb on - strand at 2898.742 kb on - strand at 2898.933 kb on - strand at 2899.236 kb on - strand, within Shewana3_2417 at 2899.267 kb on - strand, within Shewana3_2417 at 2899.267 kb on - strand, within Shewana3_2417 at 2899.341 kb on + strand, within Shewana3_2417 at 2899.374 kb on + strand, within Shewana3_2417
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 2,896,302 + -0.4 2,896,367 + -0.0 2,896,489 + +0.5 2,896,996 - +0.4 2,897,086 + +0.2 2,897,551 + Shewana3_2416 0.40 -0.5 2,897,607 + Shewana3_2416 0.44 +1.7 2,897,659 + Shewana3_2416 0.47 +1.1 2,897,780 - Shewana3_2416 0.55 -0.6 2,897,792 - Shewana3_2416 0.56 +0.4 2,897,954 - Shewana3_2416 0.67 +0.5 2,898,027 - Shewana3_2416 0.72 +0.8 2,898,161 - Shewana3_2416 0.82 +0.6 2,898,221 - Shewana3_2416 0.86 +0.2 2,898,350 + -0.9 2,898,358 - +0.7 2,898,603 - +0.6 2,898,716 - -0.1 2,898,742 - -0.7 2,898,933 - +0.1 2,899,236 - Shewana3_2417 0.22 +2.3 2,899,267 - Shewana3_2417 0.24 -0.9 2,899,267 - Shewana3_2417 0.24 -0.1 2,899,341 + Shewana3_2417 0.27 -0.2 2,899,374 + Shewana3_2417 0.29 -1.5
Or see this region's nucleotide sequence