Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2402
Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Sucrose 5 mM |
---|---|---|---|---|---|
remove | |||||
2,880,003 | - | Shewana3_2401 | 0.34 | +0.4 | |
2,880,026 | - | Shewana3_2401 | 0.37 | +0.4 | |
2,880,034 | + | Shewana3_2401 | 0.37 | +1.0 | |
2,880,042 | - | Shewana3_2401 | 0.38 | +0.3 | |
2,880,189 | - | Shewana3_2401 | 0.54 | -1.1 | |
2,880,355 | - | Shewana3_2401 | 0.72 | -0.6 | |
2,880,816 | + | -1.4 | |||
2,881,183 | - | Shewana3_2402 | 0.87 | +0.3 | |
2,881,190 | - | Shewana3_2402 | 0.89 | +0.1 | |
2,881,194 | + | +0.1 | |||
2,881,388 | + | -0.7 | |||
2,881,388 | - | -0.0 | |||
2,881,450 | + | -0.1 | |||
2,881,476 | - | Shewana3_2403 | 0.11 | +0.6 | |
2,881,476 | - | Shewana3_2403 | 0.11 | -0.5 | |
2,881,772 | - | Shewana3_2403 | 0.45 | -0.2 | |
2,882,020 | - | Shewana3_2403 | 0.74 | -0.2 | |
2,882,216 | + | +0.3 |
Or see this region's nucleotide sequence