Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2144 and Shewana3_2145 are separated by 740 nucleotides Shewana3_2145 and Shewana3_2146 are separated by 254 nucleotides Shewana3_2146 and Shewana3_2147 are separated by 25 nucleotides
Shewana3_2144: Shewana3_2144 - Na+/H+ antiporter NhaC (RefSeq), at 2,567,673 to 2,569,055
_2144
Shewana3_2145: Shewana3_2145 - aminotransferase AlaT (RefSeq), at 2,569,796 to 2,571,010
_2145
Shewana3_2146: Shewana3_2146 - hypothetical protein (RefSeq), at 2,571,265 to 2,571,852
_2146
Shewana3_2147: Shewana3_2147 - deoxyguanosinetriphosphate triphosphohydrolase-like protein (RefSeq), at 2,571,878 to 2,573,218
_2147
Position (kb)
2569
2570
2571
2572 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2569.551 kb on - strand at 2570.020 kb on - strand, within Shewana3_2145 at 2570.167 kb on + strand, within Shewana3_2145 at 2570.171 kb on + strand, within Shewana3_2145 at 2570.312 kb on + strand, within Shewana3_2145 at 2570.381 kb on - strand, within Shewana3_2145 at 2570.405 kb on - strand, within Shewana3_2145 at 2570.405 kb on - strand, within Shewana3_2145 at 2570.504 kb on - strand, within Shewana3_2145 at 2570.576 kb on + strand, within Shewana3_2145 at 2570.581 kb on + strand, within Shewana3_2145 at 2570.789 kb on + strand, within Shewana3_2145 at 2570.797 kb on - strand, within Shewana3_2145 at 2570.915 kb on - strand at 2571.042 kb on + strand at 2571.564 kb on + strand, within Shewana3_2146 at 2571.986 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 2,569,551 - -0.6 2,570,020 - Shewana3_2145 0.18 -3.4 2,570,167 + Shewana3_2145 0.31 -2.2 2,570,171 + Shewana3_2145 0.31 -4.5 2,570,312 + Shewana3_2145 0.42 -2.9 2,570,381 - Shewana3_2145 0.48 -2.8 2,570,405 - Shewana3_2145 0.50 -3.4 2,570,405 - Shewana3_2145 0.50 -2.8 2,570,504 - Shewana3_2145 0.58 -2.6 2,570,576 + Shewana3_2145 0.64 -4.2 2,570,581 + Shewana3_2145 0.65 -2.7 2,570,789 + Shewana3_2145 0.82 -1.9 2,570,797 - Shewana3_2145 0.82 -2.6 2,570,915 - -1.6 2,571,042 + -0.5 2,571,564 + Shewana3_2146 0.51 -0.9 2,571,986 + -0.3
Or see this region's nucleotide sequence