Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1896
Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Sucrose 5 mM |
---|---|---|---|---|---|
remove | |||||
2,249,508 | + | Shewana3_1895 | 0.88 | -1.7 | |
2,249,561 | + | +0.1 | |||
2,249,561 | + | +0.3 | |||
2,249,621 | - | -0.5 | |||
2,249,683 | - | +1.5 | |||
2,249,701 | - | -2.0 | |||
2,249,813 | + | +0.7 | |||
2,249,947 | - | Shewana3_1896 | 0.17 | +0.8 | |
2,249,952 | - | Shewana3_1896 | 0.18 | +0.4 | |
2,250,171 | + | Shewana3_1896 | 0.71 | +0.3 | |
2,250,223 | + | Shewana3_1896 | 0.83 | -0.6 | |
2,250,301 | + | +0.6 | |||
2,250,606 | - | -0.2 | |||
2,250,881 | + | Shewana3_1897 | 0.12 | +1.1 | |
2,250,912 | - | Shewana3_1897 | 0.13 | +0.6 | |
2,251,019 | + | Shewana3_1897 | 0.15 | +0.1 | |
2,251,100 | + | Shewana3_1897 | 0.17 | -0.2 | |
2,251,173 | + | Shewana3_1897 | 0.19 | +1.0 |
Or see this region's nucleotide sequence