Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1894
Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Sucrose 5 mM |
---|---|---|---|---|---|
remove | |||||
2,245,828 | + | Shewana3_1893 | 0.82 | -1.5 | |
2,246,088 | - | Shewana3_1893 | 0.88 | -0.6 | |
2,246,289 | - | -0.1 | |||
2,246,320 | - | +0.3 | |||
2,246,347 | + | -0.2 | |||
2,246,355 | - | -0.6 | |||
2,247,051 | + | Shewana3_1894 | 0.24 | -0.8 | |
2,247,059 | - | Shewana3_1894 | 0.25 | -2.4 | |
2,247,117 | - | Shewana3_1894 | 0.28 | -0.6 | |
2,247,342 | + | Shewana3_1894 | 0.41 | -0.8 | |
2,247,694 | + | Shewana3_1894 | 0.61 | -0.5 | |
2,247,849 | - | Shewana3_1894 | 0.69 | -0.2 | |
2,247,864 | - | Shewana3_1894 | 0.70 | +0.5 | |
2,248,047 | - | Shewana3_1894 | 0.80 | +0.3 | |
2,248,174 | - | Shewana3_1894 | 0.88 | -1.2 | |
2,248,222 | + | -1.4 | |||
2,248,345 | - | -0.8 | |||
2,248,739 | - | Shewana3_1895 | 0.14 | +0.5 | |
2,248,864 | + | Shewana3_1895 | 0.26 | -0.5 |
Or see this region's nucleotide sequence