Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1857

Experiment: Carbon source Sucrose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Sucrose 5 mM
2,198,051	-		Shewana3_1855	0.44	-0.2
2,198,090	-		Shewana3_1855	0.49	+0.2
2,198,152	+		Shewana3_1855	0.57	-0.1
2,198,152	+		Shewana3_1855	0.57	-1.1
2,198,152	+		Shewana3_1855	0.57	-0.9
2,198,152	+		Shewana3_1855	0.57	+1.0
2,198,152	+		Shewana3_1855	0.57	-1.3
2,198,152	+		Shewana3_1855	0.57	-1.3
2,198,152	+		Shewana3_1855	0.57	-0.5
2,198,152	+		Shewana3_1855	0.57	-0.0
2,198,152	+		Shewana3_1855	0.57	+0.2
2,198,153	+		Shewana3_1855	0.57	-0.1
2,198,153	+		Shewana3_1855	0.57	+0.2
2,198,153	+		Shewana3_1855	0.57	-0.3
2,198,153	+		Shewana3_1855	0.57	-0.2
2,198,153	+		Shewana3_1855	0.57	+0.4
2,198,153	+		Shewana3_1855	0.57	+0.3
2,198,153	+		Shewana3_1855	0.57	-0.5
2,198,153	+		Shewana3_1855	0.57	-0.4
2,198,153	+		Shewana3_1855	0.57	+0.6
2,198,153	+		Shewana3_1855	0.57	-1.0
2,198,153	+		Shewana3_1855	0.57	-1.8
2,198,153	+		Shewana3_1855	0.57	+0.5
2,198,153	+		Shewana3_1855	0.57	+0.1
2,198,153	+		Shewana3_1855	0.57	-2.0
2,198,153	+		Shewana3_1855	0.57	+1.2
2,198,153	+		Shewana3_1855	0.57	+0.1
2,198,153	+		Shewana3_1855	0.57	-0.1
2,198,153	+		Shewana3_1855	0.57	-0.1
2,198,159	-		Shewana3_1855	0.57	+0.6
2,198,159	-		Shewana3_1855	0.57	+2.0
2,198,159	-		Shewana3_1855	0.57	-0.9
2,198,161	-		Shewana3_1855	0.58	+0.7
2,198,161	-		Shewana3_1855	0.58	+0.6
2,198,161	-		Shewana3_1855	0.58	+0.4
2,198,161	-		Shewana3_1855	0.58	-0.9
2,198,161	-		Shewana3_1855	0.58	+0.1
2,198,161	-		Shewana3_1855	0.58	-1.6
2,198,161	-		Shewana3_1855	0.58	-1.2
2,198,161	-		Shewana3_1855	0.58	-0.7
2,198,161	-		Shewana3_1855	0.58	+0.3
2,198,161	-		Shewana3_1855	0.58	-0.0
2,198,161	-		Shewana3_1855	0.58	+0.1
2,198,161	-		Shewana3_1855	0.58	-0.3
2,198,161	-		Shewana3_1855	0.58	-0.3
2,198,161	-		Shewana3_1855	0.58	+0.2
2,198,161	-		Shewana3_1855	0.58	-0.8
2,198,166	-		Shewana3_1855	0.58	-0.4
2,198,184	+		Shewana3_1855	0.60	-0.3
2,198,184	+		Shewana3_1855	0.60	-1.2
2,198,189	-		Shewana3_1855	0.61	+0.6
2,198,207	+		Shewana3_1855	0.63	-0.4
2,198,220	-		Shewana3_1855	0.65	+0.3
2,198,220	-		Shewana3_1855	0.65	-0.8
2,198,253	+		Shewana3_1855	0.69	-0.0
2,198,255	+		Shewana3_1855	0.69	+1.1
2,198,257	-		Shewana3_1855	0.69	-0.9
2,198,261	-		Shewana3_1855	0.70	-0.4
2,198,261	-				+0.2
2,198,277	+		Shewana3_1855	0.72	+1.4
2,198,277	+		Shewana3_1855	0.72	-1.4
2,198,277	+		Shewana3_1855	0.72	-0.2
2,198,285	-		Shewana3_1855	0.73	+1.0
2,198,285	-		Shewana3_1855	0.73	+0.2
2,198,606	-				+1.0
2,198,639	+		Shewana3_1856	0.19	-0.6
2,198,639	+		Shewana3_1856	0.19	+0.4
2,198,650	+		Shewana3_1856	0.22	+0.5
2,198,650	+		Shewana3_1856	0.22	-1.0
2,198,650	+		Shewana3_1856	0.22	+0.7
2,198,650	+		Shewana3_1856	0.22	-1.6
2,198,650	+		Shewana3_1856	0.22	+0.1
2,198,650	+		Shewana3_1856	0.22	-0.1
2,198,654	-		Shewana3_1856	0.24	+0.8
2,198,658	-		Shewana3_1856	0.25	-0.4
2,198,658	-		Shewana3_1856	0.25	-0.0
2,198,658	-		Shewana3_1856	0.25	+0.2
2,198,664	-		Shewana3_1856	0.27	-0.0
2,198,671	+		Shewana3_1856	0.29	-0.9
2,198,675	-		Shewana3_1856	0.30	-0.6
2,198,679	-		Shewana3_1856	0.31	-0.3
2,198,721	+		Shewana3_1856	0.44	+0.7
2,198,721	+		Shewana3_1856	0.44	-0.3
2,198,721	+		Shewana3_1856	0.44	-0.5
2,198,722	+		Shewana3_1856	0.44	+0.5
2,198,739	+		Shewana3_1856	0.50	+0.0
2,198,743	+		Shewana3_1856	0.51	+1.0
2,198,787	+		Shewana3_1856	0.64	+0.6
2,198,787	+		Shewana3_1856	0.64	+1.1
2,198,808	+		Shewana3_1856	0.71	-0.4
2,198,816	-		Shewana3_1856	0.73	+0.8
2,198,819	+		Shewana3_1856	0.74	-0.2
2,198,820	+		Shewana3_1856	0.74	+0.2
2,198,820	+		Shewana3_1856	0.74	+0.6
2,198,820	+		Shewana3_1856	0.74	+0.8
2,198,820	+		Shewana3_1856	0.74	+0.1
2,198,820	+		Shewana3_1856	0.74	+0.8
2,198,820	+		Shewana3_1856	0.74	+0.2
2,198,820	+		Shewana3_1856	0.74	+0.2
2,198,820	+		Shewana3_1856	0.74	+1.1
2,198,820	+		Shewana3_1856	0.74	+0.0
2,198,820	+		Shewana3_1856	0.74	+0.4
2,198,820	+		Shewana3_1856	0.74	+0.4
2,198,820	+		Shewana3_1856	0.74	+0.5
2,198,828	-		Shewana3_1856	0.77	-0.0
2,198,828	-		Shewana3_1856	0.77	-0.1
2,198,828	-		Shewana3_1856	0.77	-0.2
2,198,828	-		Shewana3_1856	0.77	-0.7
2,198,828	-		Shewana3_1856	0.77	-1.0
2,198,828	-		Shewana3_1856	0.77	-0.5
2,198,828	-		Shewana3_1856	0.77	-0.1
2,198,828	-		Shewana3_1856	0.77	+0.9
2,198,828	-		Shewana3_1856	0.77	+0.4
2,198,828	-		Shewana3_1856	0.77	-0.7
2,198,828	-		Shewana3_1856	0.77	+0.4
2,198,828	-		Shewana3_1856	0.77	-3.5
2,198,832	+		Shewana3_1856	0.78	-0.5
2,198,832	+		Shewana3_1856	0.78	-0.0
2,198,837	+		Shewana3_1856	0.80	-0.5
2,198,840	-		Shewana3_1856	0.80	+0.9
2,198,871	-				+0.5
2,198,885	+				-1.3
2,198,886	+				+0.6
2,198,886	+				-0.7
2,198,886	+				+0.5
2,198,887	-				+0.8
2,198,894	-				-0.2
2,198,894	-				+0.5
2,199,013	+				+0.6
2,199,013	+				-0.6
2,199,021	-				-1.3
2,199,021	-				+0.4
2,199,026	+				-2.9
2,199,027	-				+1.1
2,199,031	+				+1.8
2,199,034	-				+0.8
2,199,034	-				-0.4
2,199,104	+		Shewana3_1857	0.22	-0.6
2,199,104	+		Shewana3_1857	0.22	+0.4
2,199,104	+		Shewana3_1857	0.22	+1.1
2,199,104	+		Shewana3_1857	0.22	+1.0
2,199,107	-		Shewana3_1857	0.22	+1.1
2,199,112	-		Shewana3_1857	0.24	+0.9
2,199,112	-		Shewana3_1857	0.24	+0.7
2,199,112	-		Shewana3_1857	0.24	+0.1
2,199,112	-		Shewana3_1857	0.24	+0.4
2,199,119	+		Shewana3_1857	0.25	-0.3
2,199,127	-		Shewana3_1857	0.28	-0.3
2,199,127	-		Shewana3_1857	0.28	-0.1
2,199,132	-		Shewana3_1857	0.29	-0.4
2,199,137	-		Shewana3_1857	0.30	-1.5
2,199,169	-		Shewana3_1857	0.39	-1.6
2,199,203	+		Shewana3_1857	0.48	-0.5
2,199,203	+		Shewana3_1857	0.48	+0.4
2,199,208	+		Shewana3_1857	0.49	-0.4
2,199,211	-		Shewana3_1857	0.50	-0.2
2,199,224	+		Shewana3_1857	0.53	-0.3
2,199,242	-		Shewana3_1857	0.58	+0.4
2,199,242	-		Shewana3_1857	0.58	+1.1
2,199,242	-		Shewana3_1857	0.58	+1.1
2,199,242	-		Shewana3_1857	0.58	+0.1
2,199,246	+		Shewana3_1857	0.59	+0.3
2,199,254	-		Shewana3_1857	0.61	+0.6
2,199,269	+		Shewana3_1857	0.65	+0.3
2,199,277	-		Shewana3_1857	0.67	+0.1
2,199,290	-		Shewana3_1857	0.70	+0.2
2,199,361	+		Shewana3_1857	0.89	+0.3
2,199,385	+				-0.5
2,199,508	-				-0.7
2,199,508	-				-1.0
2,199,524	+				+0.4
2,199,541	+				-0.3
2,199,570	-				+1.2
2,199,842	-		Shewana3_1858	0.82	+0.4
2,199,929	-				+0.3
2,200,044	-				-0.7
2,200,068	+				-0.9
2,200,240	+				-0.5
2,200,240	+				-0.0
2,200,240	+				+0.1
2,200,248	-				-2.4
2,200,248	-				-0.1