Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1706

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgltA and Shewana3_1706 are separated by 416 nucleotidesShewana3_1706 and Shewana3_1707 overlap by 7 nucleotidesShewana3_1707 and sdhA are separated by 0 nucleotides Shewana3_1705: gltA - type II citrate synthase (RefSeq), at 2,007,512 to 2,008,798 gltA Shewana3_1706: Shewana3_1706 - succinate dehydrogenase subunit C (RefSeq), at 2,009,215 to 2,009,610 _1706 Shewana3_1707: Shewana3_1707 - succinate dehydrogenase subunit D (RefSeq), at 2,009,604 to 2,009,951 _1707 Shewana3_1708: sdhA - succinate dehydrogenase flavoprotein subunit (RefSeq), at 2,009,952 to 2,011,718 sdhA Position (kb) 2009 2010Strain fitness (log2 ratio) -2 -1 0 1at 2008.220 kb on + strand, within gltAat 2008.794 kb on + strandat 2008.826 kb on - strandat 2008.917 kb on + strandat 2009.946 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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2,008,220 + gltA Shewana3_1705 0.55 -2.7
2,008,794 + -0.0
2,008,826 - +1.0
2,008,917 + +1.1
2,009,946 + +1.1

Or see this region's nucleotide sequence