Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1640
Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Sucrose 5 mM |
---|---|---|---|---|---|
remove | |||||
1,930,759 | - | -2.1 | |||
1,930,759 | - | -0.8 | |||
1,931,392 | + | +0.1 | |||
1,931,480 | - | +0.3 | |||
1,931,504 | - | -0.7 | |||
1,931,506 | + | -0.0 | |||
1,931,621 | + | Shewana3_1640 | 0.17 | -1.6 | |
1,931,621 | + | Shewana3_1640 | 0.17 | -1.8 | |
1,931,801 | + | Shewana3_1640 | 0.71 | -2.4 | |
1,931,887 | - | -0.6 | |||
1,932,015 | + | -0.9 | |||
1,932,023 | - | -0.6 | |||
1,932,025 | + | +0.2 | |||
1,932,033 | - | -0.3 | |||
1,932,033 | - | -0.3 | |||
1,932,033 | - | +0.8 | |||
1,932,033 | - | -0.6 | |||
1,932,033 | - | +0.3 | |||
1,932,103 | - | +0.6 | |||
1,932,304 | + | Shewana3_1641 | 0.22 | -0.3 | |
1,932,321 | + | Shewana3_1641 | 0.24 | +0.8 | |
1,932,344 | - | Shewana3_1641 | 0.26 | +0.4 | |
1,932,393 | + | Shewana3_1641 | 0.30 | +0.1 | |
1,932,452 | - | Shewana3_1641 | 0.34 | +0.1 | |
1,932,861 | - | Shewana3_1641 | 0.67 | -0.3 | |
1,932,861 | - | Shewana3_1641 | 0.67 | -0.5 |
Or see this region's nucleotide sequence