Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1479

Experiment: Carbon source Sucrose 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1478 and truA are separated by 103 nucleotidestruA and Shewana3_1480 are separated by 51 nucleotides Shewana3_1478: Shewana3_1478 - hypothetical protein (RefSeq), at 1,718,719 to 1,722,066 _1478 Shewana3_1479: truA - tRNA pseudouridine synthase A (RefSeq), at 1,722,170 to 1,722,955 truA Shewana3_1480: Shewana3_1480 - FolC bifunctional protein (RefSeq), at 1,723,007 to 1,724,305 _1480 Position (kb) 1722 1723Strain fitness (log2 ratio) -3 -2 -1 0 1at 1721.504 kb on - strand, within Shewana3_1478at 1721.898 kb on - strandat 1721.978 kb on + strandat 1722.336 kb on + strand, within truAat 1722.405 kb on + strand, within truAat 1722.484 kb on + strand, within truAat 1722.807 kb on + strand, within truAat 1722.858 kb on + strand, within truAat 1722.865 kb on + strand, within truAat 1723.001 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
remove
1,721,504 - Shewana3_1478 0.83 +0.5
1,721,898 - +0.1
1,721,978 + -0.3
1,722,336 + truA Shewana3_1479 0.21 -2.8
1,722,405 + truA Shewana3_1479 0.30 -2.9
1,722,484 + truA Shewana3_1479 0.40 -2.0
1,722,807 + truA Shewana3_1479 0.81 -1.1
1,722,858 + truA Shewana3_1479 0.88 -2.7
1,722,865 + truA Shewana3_1479 0.88 -2.5
1,723,001 + -1.2

Or see this region's nucleotide sequence