Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1188 and Shewana3_1189 overlap by 1 nucleotides Shewana3_1189 and Shewana3_1190 are separated by 169 nucleotides Shewana3_1190 and Shewana3_1191 are separated by 68 nucleotides Shewana3_1191 and Shewana3_1192 overlap by 1 nucleotides
Shewana3_1188: Shewana3_1188 - putative oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 1,396,824 to 1,397,981
_1188
Shewana3_1189: Shewana3_1189 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (RefSeq), at 1,397,981 to 1,398,598
_1189
Shewana3_1190: Shewana3_1190 - hypothetical protein (RefSeq), at 1,398,768 to 1,399,202
_1190
Shewana3_1191: Shewana3_1191 - hypothetical protein (RefSeq), at 1,399,271 to 1,399,561
_1191
Shewana3_1192: Shewana3_1192 - protein of unknown function YGGT (RefSeq), at 1,399,561 to 1,400,109
_1192
Position (kb)
1397
1398
1399 Strain fitness (log2 ratio)
-1
0
1
2 at 1397.100 kb on - strand, within Shewana3_1188 at 1397.100 kb on - strand, within Shewana3_1188 at 1397.588 kb on + strand, within Shewana3_1188 at 1397.650 kb on - strand, within Shewana3_1188 at 1397.793 kb on + strand, within Shewana3_1188 at 1397.914 kb on + strand at 1397.922 kb on - strand at 1398.032 kb on - strand at 1398.353 kb on - strand, within Shewana3_1189 at 1398.493 kb on + strand, within Shewana3_1189 at 1398.805 kb on + strand at 1399.097 kb on - strand, within Shewana3_1190 at 1399.358 kb on + strand, within Shewana3_1191 at 1399.559 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 1,397,100 - Shewana3_1188 0.24 +1.8 1,397,100 - Shewana3_1188 0.24 -0.6 1,397,588 + Shewana3_1188 0.66 -0.8 1,397,650 - Shewana3_1188 0.71 +0.2 1,397,793 + Shewana3_1188 0.84 -0.1 1,397,914 + -0.6 1,397,922 - +0.5 1,398,032 - +0.2 1,398,353 - Shewana3_1189 0.60 -0.3 1,398,493 + Shewana3_1189 0.83 -1.2 1,398,805 + -0.0 1,399,097 - Shewana3_1190 0.76 -0.7 1,399,358 + Shewana3_1191 0.30 -0.1 1,399,559 + -0.8
Or see this region's nucleotide sequence