Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1139

Experiment: Carbon source Sucrose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Sucrose 5 mM
1,341,863	-		Shewana3_1138	0.52	-0.8
1,341,949	+		Shewana3_1138	0.65	+0.1
1,341,957	-		Shewana3_1138	0.66	+0.4
1,341,983	-		Shewana3_1138	0.70	+0.5
1,342,164	+				-0.4
1,342,164	+				+1.0
1,342,254	+				-0.4
1,342,254	+				+0.3
1,342,342	+				+0.6
1,342,371	-				+1.3
1,342,664	-				-4.4
1,342,733	-				-4.2
1,343,146	+	thrA	Shewana3_1139	0.13	-3.4
1,343,146	+	thrA	Shewana3_1139	0.13	-4.0
1,343,146	+	thrA	Shewana3_1139	0.13	-2.9
1,343,154	-	thrA	Shewana3_1139	0.13	-2.7
1,343,428	-	thrA	Shewana3_1139	0.24	-0.6
1,343,436	-	thrA	Shewana3_1139	0.25	-4.3
1,343,520	+	thrA	Shewana3_1139	0.28	-3.9
1,343,536	+	thrA	Shewana3_1139	0.29	-4.6
1,343,597	+	thrA	Shewana3_1139	0.31	-3.0
1,343,608	+	thrA	Shewana3_1139	0.32	-3.5
1,343,616	-	thrA	Shewana3_1139	0.32	-4.7
1,343,616	-	thrA	Shewana3_1139	0.32	-4.5
1,343,632	+	thrA	Shewana3_1139	0.33	-2.5
1,343,696	+	thrA	Shewana3_1139	0.35	-3.7
1,344,049	+	thrA	Shewana3_1139	0.50	-3.1
1,344,578	+	thrA	Shewana3_1139	0.71	-4.7
1,344,592	+	thrA	Shewana3_1139	0.72	-0.8
1,344,598	-	thrA	Shewana3_1139	0.72	-4.2
1,344,773	+	thrA	Shewana3_1139	0.79	-1.3
1,344,781	-	thrA	Shewana3_1139	0.79	-1.9
1,344,785	+	thrA	Shewana3_1139	0.79	-1.4
1,344,853	+	thrA	Shewana3_1139	0.82	-3.8
1,345,043	+	thrA	Shewana3_1139	0.90	-3.0
1,345,070	+				-4.2
1,345,132	+				-5.3
1,345,293	-				-3.0
1,345,820	-		Shewana3_1140	0.57	-5.5
1,345,928	+		Shewana3_1140	0.68	-3.4
1,345,935	+		Shewana3_1140	0.69	-2.5
1,345,943	-		Shewana3_1140	0.70	-3.6
1,345,970	+		Shewana3_1140	0.73	-3.5
1,345,972	-		Shewana3_1140	0.73	-3.6
1,345,978	-		Shewana3_1140	0.73	-4.1
1,345,995	-		Shewana3_1140	0.75	-2.0
1,346,215	-				-4.9
1,346,252	+				-2.0
1,346,281	+				-4.2