Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1112 and Shewana3_1113 are separated by 134 nucleotides Shewana3_1113 and mazG are separated by 272 nucleotides mazG and pyrG are separated by 116 nucleotides
Shewana3_1112: Shewana3_1112 - hypothetical protein (RefSeq), at 1,309,586 to 1,312,291
_1112
Shewana3_1113: Shewana3_1113 - hypothetical protein (RefSeq), at 1,312,426 to 1,312,629
_1113
Shewana3_1114: mazG - nucleoside triphosphate pyrophosphohydrolase (RefSeq), at 1,312,902 to 1,313,780
mazG
Shewana3_1115: pyrG - CTP synthetase (RefSeq), at 1,313,897 to 1,315,537
pyrG
Position (kb)
1312
1313
1314 Strain fitness (log2 ratio)
-1
0
1 at 1311.902 kb on + strand, within Shewana3_1112 at 1312.205 kb on - strand at 1312.207 kb on + strand at 1312.274 kb on - strand at 1312.347 kb on + strand at 1312.387 kb on - strand at 1312.449 kb on - strand, within Shewana3_1113 at 1312.612 kb on - strand at 1312.660 kb on + strand at 1312.668 kb on - strand at 1312.729 kb on + strand at 1312.729 kb on + strand at 1312.813 kb on - strand at 1312.830 kb on - strand at 1312.864 kb on + strand at 1313.176 kb on - strand, within mazG at 1313.265 kb on - strand, within mazG at 1313.457 kb on + strand, within mazG at 1313.457 kb on + strand, within mazG at 1313.611 kb on + strand, within mazG at 1313.725 kb on + strand at 1313.733 kb on - strand at 1313.733 kb on - strand at 1313.755 kb on + strand at 1313.755 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 1,311,902 + Shewana3_1112 0.86 +0.0 1,312,205 - -0.6 1,312,207 + +1.0 1,312,274 - -0.3 1,312,347 + -0.4 1,312,387 - +0.6 1,312,449 - Shewana3_1113 0.11 -1.7 1,312,612 - -0.2 1,312,660 + -0.6 1,312,668 - +0.6 1,312,729 + -0.1 1,312,729 + +0.9 1,312,813 - +0.2 1,312,830 - +0.3 1,312,864 + -1.5 1,313,176 - mazG Shewana3_1114 0.31 +0.4 1,313,265 - mazG Shewana3_1114 0.41 -0.3 1,313,457 + mazG Shewana3_1114 0.63 +1.1 1,313,457 + mazG Shewana3_1114 0.63 +1.0 1,313,611 + mazG Shewana3_1114 0.81 +0.9 1,313,725 + +0.2 1,313,733 - -1.1 1,313,733 - +0.1 1,313,755 + -0.3 1,313,755 + +0.0
Or see this region's nucleotide sequence