Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1074 and Shewana3_1075 are separated by 203 nucleotides Shewana3_1075 and Shewana3_1076 are separated by 88 nucleotides
Shewana3_1074: Shewana3_1074 - extracellular solute-binding protein (RefSeq), at 1,259,924 to 1,260,742
_1074
Shewana3_1075: Shewana3_1075 - OsmC family protein (RefSeq), at 1,260,946 to 1,261,374
_1075
Shewana3_1076: Shewana3_1076 - TetR family transcriptional regulator (RefSeq), at 1,261,463 to 1,262,083
_1076
Position (kb)
1260
1261
1262 Strain fitness (log2 ratio)
-2
-1
0
1 at 1259.951 kb on - strand at 1260.273 kb on - strand, within Shewana3_1074 at 1260.390 kb on - strand, within Shewana3_1074 at 1260.395 kb on - strand, within Shewana3_1074 at 1260.455 kb on + strand, within Shewana3_1074 at 1260.530 kb on + strand, within Shewana3_1074 at 1260.600 kb on + strand, within Shewana3_1074 at 1260.601 kb on - strand, within Shewana3_1074 at 1261.033 kb on + strand, within Shewana3_1075 at 1261.167 kb on + strand, within Shewana3_1075 at 1261.175 kb on - strand, within Shewana3_1075 at 1261.264 kb on + strand, within Shewana3_1075 at 1261.346 kb on + strand at 1261.346 kb on + strand at 1261.398 kb on + strand at 1261.567 kb on - strand, within Shewana3_1076 at 1261.652 kb on - strand, within Shewana3_1076 at 1261.796 kb on - strand, within Shewana3_1076 at 1261.949 kb on - strand, within Shewana3_1076 at 1261.959 kb on - strand, within Shewana3_1076 at 1261.999 kb on - strand, within Shewana3_1076
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 1,259,951 - -0.3 1,260,273 - Shewana3_1074 0.43 +0.8 1,260,390 - Shewana3_1074 0.57 +0.3 1,260,395 - Shewana3_1074 0.58 +0.1 1,260,455 + Shewana3_1074 0.65 +0.9 1,260,530 + Shewana3_1074 0.74 +0.3 1,260,600 + Shewana3_1074 0.83 +0.1 1,260,601 - Shewana3_1074 0.83 +0.1 1,261,033 + Shewana3_1075 0.20 -0.6 1,261,167 + Shewana3_1075 0.52 -0.7 1,261,175 - Shewana3_1075 0.53 +0.0 1,261,264 + Shewana3_1075 0.74 -0.5 1,261,346 + +0.9 1,261,346 + +0.7 1,261,398 + +0.5 1,261,567 - Shewana3_1076 0.17 +0.1 1,261,652 - Shewana3_1076 0.30 +0.2 1,261,796 - Shewana3_1076 0.54 -1.7 1,261,949 - Shewana3_1076 0.78 +0.7 1,261,959 - Shewana3_1076 0.80 -1.1 1,261,999 - Shewana3_1076 0.86 -1.8
Or see this region's nucleotide sequence