Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1003

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntleuS and Shewana3_1002 are separated by 121 nucleotidesShewana3_1002 and Shewana3_1003 are separated by 61 nucleotidesShewana3_1003 and Shewana3_1004 are separated by 15 nucleotides Shewana3_1001: leuS - leucyl-tRNA synthetase (RefSeq), at 1,170,450 to 1,173,029 leuS Shewana3_1002: Shewana3_1002 - hypothetical protein (RefSeq), at 1,173,151 to 1,173,651 _1002 Shewana3_1003: Shewana3_1003 - methylation site containing protein (RefSeq), at 1,173,713 to 1,174,207 _1003 Shewana3_1004: Shewana3_1004 - apolipoprotein N-acyltransferase (RefSeq), at 1,174,223 to 1,175,773 _1004 Position (kb) 1173 1174 1175Strain fitness (log2 ratio) -1 0 1 2at 1173.108 kb on - strandat 1173.383 kb on + strand, within Shewana3_1002at 1173.383 kb on + strand, within Shewana3_1002at 1173.383 kb on + strand, within Shewana3_1002at 1173.383 kb on + strand, within Shewana3_1002at 1173.403 kb on - strand, within Shewana3_1002at 1173.482 kb on + strand, within Shewana3_1002at 1173.496 kb on - strand, within Shewana3_1002at 1173.503 kb on + strand, within Shewana3_1002at 1173.530 kb on + strand, within Shewana3_1002at 1173.544 kb on - strand, within Shewana3_1002at 1173.605 kb on - strandat 1173.719 kb on + strandat 1173.719 kb on + strandat 1173.727 kb on - strandat 1173.849 kb on - strand, within Shewana3_1003at 1174.092 kb on + strand, within Shewana3_1003at 1174.237 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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1,173,108 - +0.9
1,173,383 + Shewana3_1002 0.46 -0.4
1,173,383 + Shewana3_1002 0.46 +1.4
1,173,383 + Shewana3_1002 0.46 +0.6
1,173,383 + Shewana3_1002 0.46 -0.3
1,173,403 - Shewana3_1002 0.50 +1.8
1,173,482 + Shewana3_1002 0.66 -0.6
1,173,496 - Shewana3_1002 0.69 +0.9
1,173,503 + Shewana3_1002 0.70 +0.3
1,173,530 + Shewana3_1002 0.76 +0.9
1,173,544 - Shewana3_1002 0.78 +0.0
1,173,605 - -0.2
1,173,719 + -0.5
1,173,719 + +0.1
1,173,727 - +0.8
1,173,849 - Shewana3_1003 0.27 +0.5
1,174,092 + Shewana3_1003 0.77 +0.7
1,174,237 + -0.4

Or see this region's nucleotide sequence