Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt leuS and Shewana3_1002 are separated by 121 nucleotides Shewana3_1002 and Shewana3_1003 are separated by 61 nucleotides Shewana3_1003 and Shewana3_1004 are separated by 15 nucleotides
Shewana3_1001: leuS - leucyl-tRNA synthetase (RefSeq), at 1,170,450 to 1,173,029
leuS
Shewana3_1002: Shewana3_1002 - hypothetical protein (RefSeq), at 1,173,151 to 1,173,651
_1002
Shewana3_1003: Shewana3_1003 - methylation site containing protein (RefSeq), at 1,173,713 to 1,174,207
_1003
Shewana3_1004: Shewana3_1004 - apolipoprotein N-acyltransferase (RefSeq), at 1,174,223 to 1,175,773
_1004
Position (kb)
1173
1174
1175 Strain fitness (log2 ratio)
-1
0
1
2 at 1173.108 kb on - strand at 1173.383 kb on + strand, within Shewana3_1002 at 1173.383 kb on + strand, within Shewana3_1002 at 1173.383 kb on + strand, within Shewana3_1002 at 1173.383 kb on + strand, within Shewana3_1002 at 1173.403 kb on - strand, within Shewana3_1002 at 1173.482 kb on + strand, within Shewana3_1002 at 1173.496 kb on - strand, within Shewana3_1002 at 1173.503 kb on + strand, within Shewana3_1002 at 1173.530 kb on + strand, within Shewana3_1002 at 1173.544 kb on - strand, within Shewana3_1002 at 1173.605 kb on - strand at 1173.719 kb on + strand at 1173.719 kb on + strand at 1173.727 kb on - strand at 1173.849 kb on - strand, within Shewana3_1003 at 1174.092 kb on + strand, within Shewana3_1003 at 1174.237 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 1,173,108 - +0.9 1,173,383 + Shewana3_1002 0.46 -0.4 1,173,383 + Shewana3_1002 0.46 +1.4 1,173,383 + Shewana3_1002 0.46 +0.6 1,173,383 + Shewana3_1002 0.46 -0.3 1,173,403 - Shewana3_1002 0.50 +1.8 1,173,482 + Shewana3_1002 0.66 -0.6 1,173,496 - Shewana3_1002 0.69 +0.9 1,173,503 + Shewana3_1002 0.70 +0.3 1,173,530 + Shewana3_1002 0.76 +0.9 1,173,544 - Shewana3_1002 0.78 +0.0 1,173,605 - -0.2 1,173,719 + -0.5 1,173,719 + +0.1 1,173,727 - +0.8 1,173,849 - Shewana3_1003 0.27 +0.5 1,174,092 + Shewana3_1003 0.77 +0.7 1,174,237 + -0.4
Or see this region's nucleotide sequence