Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0996

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0995 and Shewana3_0996 are separated by 60 nucleotidesShewana3_0996 and Shewana3_0997 overlap by 1 nucleotidesShewana3_0997 and Shewana3_0998 are separated by 102 nucleotides Shewana3_0995: Shewana3_0995 - peptidoglycan glycosyltransferase (RefSeq), at 1,165,327 to 1,167,183 _0995 Shewana3_0996: Shewana3_0996 - rRNA large subunit methyltransferase (RefSeq), at 1,167,244 to 1,167,714 _0996 Shewana3_0997: Shewana3_0997 - iojap-like protein (RefSeq), at 1,167,714 to 1,168,058 _0997 Shewana3_0998: Shewana3_0998 - nicotinate-nucleotide adenylyltransferase (RefSeq), at 1,168,161 to 1,168,799 _0998 Position (kb) 1167 1168Strain fitness (log2 ratio) -3 -2 -1 0 1at 1167.341 kb on - strand, within Shewana3_0996at 1167.342 kb on - strand, within Shewana3_0996at 1168.055 kb on - strandat 1168.095 kb on - strandat 1168.095 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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1,167,341 - Shewana3_0996 0.21 +0.1
1,167,342 - Shewana3_0996 0.21 -2.9
1,168,055 - +0.4
1,168,095 - +0.7
1,168,095 - +0.6

Or see this region's nucleotide sequence