Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0967
Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Sucrose 5 mM |
---|---|---|---|---|---|
remove | |||||
1,133,218 | + | +0.5 | |||
1,134,666 | + | Shewana3_0967 | 0.39 | -3.8 | |
1,134,674 | + | Shewana3_0967 | 0.39 | -5.3 | |
1,134,674 | - | Shewana3_0967 | 0.39 | -3.5 | |
1,134,681 | + | Shewana3_0967 | 0.40 | -3.0 | |
1,134,792 | + | Shewana3_0967 | 0.50 | -4.3 | |
1,134,911 | - | Shewana3_0967 | 0.60 | -1.2 | |
1,134,966 | - | Shewana3_0967 | 0.65 | -2.5 | |
1,135,046 | - | Shewana3_0967 | 0.71 | -2.3 | |
1,135,083 | - | Shewana3_0967 | 0.75 | -3.6 | |
1,135,223 | + | Shewana3_0967 | 0.87 | -3.3 | |
1,135,236 | + | Shewana3_0967 | 0.88 | -4.3 | |
1,135,269 | - | -2.8 | |||
1,135,361 | + | -2.2 | |||
1,135,555 | - | -6.1 | |||
1,135,821 | + | carB | Shewana3_0968 | 0.13 | -4.7 |
1,135,855 | + | carB | Shewana3_0968 | 0.14 | -4.7 |
1,136,029 | + | carB | Shewana3_0968 | 0.19 | -3.3 |
1,136,092 | - | carB | Shewana3_0968 | 0.21 | -2.1 |
1,136,203 | + | carB | Shewana3_0968 | 0.25 | -2.5 |
1,136,219 | - | carB | Shewana3_0968 | 0.25 | -2.3 |
1,136,258 | + | carB | Shewana3_0968 | 0.26 | -6.3 |
1,136,258 | + | carB | Shewana3_0968 | 0.26 | -3.8 |
Or see this region's nucleotide sequence