Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0954 and proA are separated by 12 nucleotides proA and Shewana3_0956 are separated by 73 nucleotides Shewana3_0956 and Shewana3_0957 are separated by 124 nucleotides
Shewana3_0954: Shewana3_0954 - gamma-glutamyl kinase (RefSeq), at 1,119,491 to 1,120,609
_0954
Shewana3_0955: proA - gamma-glutamyl phosphate reductase (RefSeq), at 1,120,622 to 1,121,899
proA
Shewana3_0956: Shewana3_0956 - hypothetical protein (RefSeq), at 1,121,973 to 1,122,275
_0956
Shewana3_0957: Shewana3_0957 - ybaK/ebsC protein (RefSeq), at 1,122,400 to 1,122,876
_0957
Position (kb) 1120
1121
1122 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1119.816 kb on + strand, within Shewana3_0954 at 1119.816 kb on + strand, within Shewana3_0954 at 1119.824 kb on - strand, within Shewana3_0954 at 1119.984 kb on - strand, within Shewana3_0954 at 1120.048 kb on + strand, within Shewana3_0954 at 1120.053 kb on + strand, within Shewana3_0954 at 1120.325 kb on + strand, within Shewana3_0954 at 1120.499 kb on + strand at 1120.580 kb on - strand at 1120.629 kb on + strand at 1120.655 kb on + strand at 1120.696 kb on - strand at 1120.924 kb on - strand, within proA at 1120.949 kb on + strand, within proA at 1120.957 kb on - strand, within proA at 1120.958 kb on - strand, within proA at 1121.122 kb on - strand, within proA at 1121.206 kb on + strand, within proA at 1121.206 kb on + strand, within proA at 1121.360 kb on + strand, within proA at 1121.391 kb on + strand, within proA at 1121.391 kb on + strand, within proA at 1121.399 kb on - strand, within proA at 1121.507 kb on + strand, within proA at 1121.512 kb on + strand, within proA at 1121.561 kb on + strand, within proA at 1121.588 kb on + strand, within proA at 1121.672 kb on - strand, within proA at 1121.856 kb on + strand at 1121.879 kb on + strand at 1122.063 kb on - strand, within Shewana3_0956 at 1122.063 kb on - strand, within Shewana3_0956 at 1122.090 kb on + strand, within Shewana3_0956 at 1122.113 kb on + strand, within Shewana3_0956 at 1122.113 kb on + strand, within Shewana3_0956 at 1122.113 kb on + strand, within Shewana3_0956 at 1122.115 kb on + strand, within Shewana3_0956 at 1122.121 kb on - strand, within Shewana3_0956 at 1122.148 kb on + strand, within Shewana3_0956 at 1122.187 kb on + strand, within Shewana3_0956 at 1122.207 kb on + strand, within Shewana3_0956 at 1122.348 kb on - strand at 1122.414 kb on - strand at 1122.474 kb on - strand, within Shewana3_0957 at 1122.800 kb on - strand, within Shewana3_0957
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 1,119,816 + Shewana3_0954 0.29 -4.3 1,119,816 + Shewana3_0954 0.29 -3.5 1,119,824 - Shewana3_0954 0.30 -2.7 1,119,984 - Shewana3_0954 0.44 -4.4 1,120,048 + Shewana3_0954 0.50 -2.3 1,120,053 + Shewana3_0954 0.50 -1.2 1,120,325 + Shewana3_0954 0.75 -5.0 1,120,499 + -4.4 1,120,580 - -3.9 1,120,629 + -3.6 1,120,655 + -3.5 1,120,696 - -3.5 1,120,924 - proA Shewana3_0955 0.24 -2.8 1,120,949 + proA Shewana3_0955 0.26 -2.8 1,120,957 - proA Shewana3_0955 0.26 -4.4 1,120,958 - proA Shewana3_0955 0.26 -5.4 1,121,122 - proA Shewana3_0955 0.39 -2.9 1,121,206 + proA Shewana3_0955 0.46 -4.9 1,121,206 + proA Shewana3_0955 0.46 -3.6 1,121,360 + proA Shewana3_0955 0.58 -5.3 1,121,391 + proA Shewana3_0955 0.60 -3.9 1,121,391 + proA Shewana3_0955 0.60 -4.4 1,121,399 - proA Shewana3_0955 0.61 -3.6 1,121,507 + proA Shewana3_0955 0.69 +0.0 1,121,512 + proA Shewana3_0955 0.70 -4.4 1,121,561 + proA Shewana3_0955 0.73 -4.9 1,121,588 + proA Shewana3_0955 0.76 -3.2 1,121,672 - proA Shewana3_0955 0.82 -1.6 1,121,856 + -4.2 1,121,879 + -4.2 1,122,063 - Shewana3_0956 0.30 +0.4 1,122,063 - Shewana3_0956 0.30 +1.4 1,122,090 + Shewana3_0956 0.39 +1.6 1,122,113 + Shewana3_0956 0.46 +0.2 1,122,113 + Shewana3_0956 0.46 +0.5 1,122,113 + Shewana3_0956 0.46 +0.2 1,122,115 + Shewana3_0956 0.47 -0.5 1,122,121 - Shewana3_0956 0.49 +0.9 1,122,148 + Shewana3_0956 0.58 +0.6 1,122,187 + Shewana3_0956 0.71 +0.2 1,122,207 + Shewana3_0956 0.77 +0.1 1,122,348 - +0.3 1,122,414 - -0.7 1,122,474 - Shewana3_0957 0.16 +1.0 1,122,800 - Shewana3_0957 0.84 +0.3
Or see this region's nucleotide sequence