Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0896 and Shewana3_0897 are separated by 62 nucleotides Shewana3_0897 and Shewana3_0898 are separated by 241 nucleotides Shewana3_0898 and Shewana3_0899 are separated by 55 nucleotides
Shewana3_0896: Shewana3_0896 - no description, at 1,044,943 to 1,046,468
_0896
Shewana3_0897: Shewana3_0897 - aminopeptidase N (RefSeq), at 1,046,531 to 1,049,164
_0897
Shewana3_0898: Shewana3_0898 - hypothetical protein (RefSeq), at 1,049,406 to 1,050,011
_0898
Shewana3_0899: Shewana3_0899 - TPR repeat-containing protein (RefSeq), at 1,050,067 to 1,051,467
_0899
Position (kb)
1046
1047
1048
1049
1050 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1046.559 kb on + strand at 1046.593 kb on + strand at 1046.601 kb on - strand at 1046.601 kb on - strand at 1046.668 kb on - strand at 1046.733 kb on + strand at 1047.022 kb on - strand, within Shewana3_0897 at 1047.255 kb on - strand, within Shewana3_0897 at 1047.355 kb on - strand, within Shewana3_0897 at 1047.373 kb on + strand, within Shewana3_0897 at 1047.373 kb on + strand, within Shewana3_0897 at 1047.381 kb on - strand, within Shewana3_0897 at 1047.391 kb on + strand, within Shewana3_0897 at 1047.391 kb on + strand, within Shewana3_0897 at 1047.391 kb on + strand, within Shewana3_0897 at 1047.462 kb on + strand, within Shewana3_0897 at 1047.477 kb on - strand, within Shewana3_0897 at 1047.487 kb on - strand, within Shewana3_0897 at 1047.599 kb on - strand, within Shewana3_0897 at 1047.606 kb on + strand, within Shewana3_0897 at 1047.670 kb on - strand, within Shewana3_0897 at 1047.752 kb on - strand, within Shewana3_0897 at 1047.752 kb on - strand, within Shewana3_0897 at 1047.770 kb on + strand, within Shewana3_0897 at 1047.844 kb on + strand, within Shewana3_0897 at 1048.093 kb on - strand, within Shewana3_0897 at 1048.192 kb on + strand, within Shewana3_0897 at 1048.385 kb on + strand, within Shewana3_0897 at 1048.472 kb on - strand, within Shewana3_0897 at 1048.700 kb on - strand, within Shewana3_0897 at 1048.942 kb on + strand at 1049.127 kb on - strand at 1049.129 kb on + strand at 1049.174 kb on - strand at 1049.254 kb on - strand at 1049.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 1,046,559 + -3.0 1,046,593 + +0.1 1,046,601 - -0.2 1,046,601 - -0.2 1,046,668 - -0.9 1,046,733 + +0.2 1,047,022 - Shewana3_0897 0.19 -0.6 1,047,255 - Shewana3_0897 0.27 +0.3 1,047,355 - Shewana3_0897 0.31 +0.3 1,047,373 + Shewana3_0897 0.32 +0.3 1,047,373 + Shewana3_0897 0.32 +0.3 1,047,381 - Shewana3_0897 0.32 +1.0 1,047,391 + Shewana3_0897 0.33 +0.6 1,047,391 + Shewana3_0897 0.33 -0.5 1,047,391 + Shewana3_0897 0.33 -0.8 1,047,462 + Shewana3_0897 0.35 +0.3 1,047,477 - Shewana3_0897 0.36 +0.1 1,047,487 - Shewana3_0897 0.36 +0.2 1,047,599 - Shewana3_0897 0.41 -0.2 1,047,606 + Shewana3_0897 0.41 +0.2 1,047,670 - Shewana3_0897 0.43 +0.6 1,047,752 - Shewana3_0897 0.46 +0.2 1,047,752 - Shewana3_0897 0.46 -0.2 1,047,770 + Shewana3_0897 0.47 +0.4 1,047,844 + Shewana3_0897 0.50 -0.5 1,048,093 - Shewana3_0897 0.59 +0.8 1,048,192 + Shewana3_0897 0.63 +0.2 1,048,385 + Shewana3_0897 0.70 +1.2 1,048,472 - Shewana3_0897 0.74 -0.4 1,048,700 - Shewana3_0897 0.82 +0.3 1,048,942 + +0.3 1,049,127 - -0.2 1,049,129 + -1.7 1,049,174 - +0.6 1,049,254 - -0.5 1,049,430 - +0.7
Or see this region's nucleotide sequence