Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0893
Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Sucrose 5 mM |
---|---|---|---|---|---|
remove | |||||
1,039,076 | + | Shewana3_0892 | 0.37 | -0.9 | |
1,039,238 | + | Shewana3_0892 | 0.48 | -0.1 | |
1,039,388 | - | Shewana3_0892 | 0.59 | -0.6 | |
1,039,437 | - | Shewana3_0892 | 0.62 | +0.9 | |
1,039,507 | + | Shewana3_0892 | 0.67 | +0.8 | |
1,039,679 | - | Shewana3_0892 | 0.78 | +1.0 | |
1,039,687 | + | Shewana3_0892 | 0.79 | +0.2 | |
1,039,842 | - | Shewana3_0892 | 0.89 | +1.3 | |
1,039,925 | + | +0.7 | |||
1,039,944 | + | -0.2 | |||
1,039,959 | + | +0.6 | |||
1,040,207 | + | Shewana3_0893 | 0.21 | +0.5 | |
1,040,429 | - | Shewana3_0893 | 0.44 | +0.2 | |
1,040,526 | + | Shewana3_0893 | 0.54 | -0.0 | |
1,040,749 | - | Shewana3_0893 | 0.78 | +0.8 | |
1,041,110 | + | -0.5 | |||
1,041,110 | + | +0.3 | |||
1,041,110 | + | -0.5 | |||
1,041,110 | + | -0.2 | |||
1,041,110 | - | +0.2 | |||
1,041,118 | - | +0.2 | |||
1,041,118 | - | +0.8 | |||
1,041,118 | - | +0.6 | |||
1,041,158 | + | +0.2 | |||
1,041,178 | - | +0.7 | |||
1,041,614 | + | Shewana3_0894 | 0.29 | -0.4 | |
1,041,672 | + | Shewana3_0894 | 0.33 | -0.5 |
Or see this region's nucleotide sequence