Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pntA and Shewana3_0855 are separated by 417 nucleotides Shewana3_0855 and Shewana3_0856 are separated by 74 nucleotides
Shewana3_0854: pntA - NAD(P) transhydrogenase subunit alpha (RefSeq), at 991,421 to 992,947
pntA
Shewana3_0855: Shewana3_0855 - sulfite reductase (NADPH) alpha subunit (RefSeq), at 993,365 to 995,179
_0855
Shewana3_0856: Shewana3_0856 - sulfite reductase subunit beta (RefSeq), at 995,254 to 996,951
_0856
Position (kb) 993
994
995
996 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 992.391 kb on - strand, within pntA at 992.391 kb on - strand, within pntA at 992.567 kb on - strand, within pntA at 992.631 kb on + strand, within pntA at 992.674 kb on + strand, within pntA at 992.692 kb on - strand, within pntA at 992.997 kb on + strand at 993.013 kb on + strand at 993.021 kb on - strand at 993.021 kb on - strand at 993.132 kb on - strand at 993.349 kb on + strand at 993.349 kb on + strand at 993.357 kb on - strand at 993.477 kb on - strand at 993.528 kb on - strand at 993.561 kb on - strand, within Shewana3_0855 at 993.642 kb on - strand, within Shewana3_0855 at 993.655 kb on - strand, within Shewana3_0855 at 993.662 kb on + strand, within Shewana3_0855 at 993.860 kb on + strand, within Shewana3_0855 at 993.921 kb on + strand, within Shewana3_0855 at 993.965 kb on + strand, within Shewana3_0855 at 994.098 kb on - strand, within Shewana3_0855 at 994.194 kb on + strand, within Shewana3_0855 at 994.247 kb on + strand, within Shewana3_0855 at 994.255 kb on - strand, within Shewana3_0855 at 994.255 kb on - strand, within Shewana3_0855 at 994.255 kb on - strand, within Shewana3_0855 at 994.347 kb on - strand, within Shewana3_0855 at 994.347 kb on - strand, within Shewana3_0855 at 994.355 kb on + strand, within Shewana3_0855 at 994.391 kb on - strand, within Shewana3_0855 at 994.474 kb on + strand, within Shewana3_0855 at 994.474 kb on + strand, within Shewana3_0855 at 994.482 kb on - strand, within Shewana3_0855 at 994.533 kb on - strand, within Shewana3_0855 at 994.564 kb on + strand, within Shewana3_0855 at 994.695 kb on - strand, within Shewana3_0855 at 994.870 kb on + strand, within Shewana3_0855 at 994.969 kb on - strand, within Shewana3_0855 at 994.985 kb on + strand, within Shewana3_0855 at 994.986 kb on + strand, within Shewana3_0855 at 995.055 kb on - strand at 995.087 kb on + strand at 995.148 kb on + strand at 995.286 kb on + strand at 995.462 kb on + strand, within Shewana3_0856 at 995.496 kb on + strand, within Shewana3_0856 at 995.504 kb on - strand, within Shewana3_0856 at 995.504 kb on - strand, within Shewana3_0856 at 995.583 kb on - strand, within Shewana3_0856 at 995.722 kb on - strand, within Shewana3_0856 at 995.788 kb on - strand, within Shewana3_0856 at 995.825 kb on - strand, within Shewana3_0856 at 996.024 kb on + strand, within Shewana3_0856 at 996.146 kb on - strand, within Shewana3_0856
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 992,391 - pntA Shewana3_0854 0.64 +0.5 992,391 - pntA Shewana3_0854 0.64 +0.3 992,567 - pntA Shewana3_0854 0.75 +1.7 992,631 + pntA Shewana3_0854 0.79 +0.1 992,674 + pntA Shewana3_0854 0.82 -0.2 992,692 - pntA Shewana3_0854 0.83 +0.3 992,997 + +0.3 993,013 + -0.3 993,021 - -0.2 993,021 - +0.2 993,132 - -0.0 993,349 + -4.2 993,349 + -3.5 993,357 - -4.1 993,477 - -2.0 993,528 - -0.9 993,561 - Shewana3_0855 0.11 -3.0 993,642 - Shewana3_0855 0.15 -3.9 993,655 - Shewana3_0855 0.16 -3.4 993,662 + Shewana3_0855 0.16 -3.5 993,860 + Shewana3_0855 0.27 -1.1 993,921 + Shewana3_0855 0.31 -5.0 993,965 + Shewana3_0855 0.33 -5.7 994,098 - Shewana3_0855 0.40 -3.4 994,194 + Shewana3_0855 0.46 -3.7 994,247 + Shewana3_0855 0.49 -5.6 994,255 - Shewana3_0855 0.49 -3.6 994,255 - Shewana3_0855 0.49 -1.8 994,255 - Shewana3_0855 0.49 -3.6 994,347 - Shewana3_0855 0.54 -2.7 994,347 - Shewana3_0855 0.54 -5.2 994,355 + Shewana3_0855 0.55 -3.8 994,391 - Shewana3_0855 0.57 -4.3 994,474 + Shewana3_0855 0.61 -3.3 994,474 + Shewana3_0855 0.61 -5.1 994,482 - Shewana3_0855 0.62 -4.3 994,533 - Shewana3_0855 0.64 -3.3 994,564 + Shewana3_0855 0.66 -1.8 994,695 - Shewana3_0855 0.73 -4.4 994,870 + Shewana3_0855 0.83 -3.9 994,969 - Shewana3_0855 0.88 -3.3 994,985 + Shewana3_0855 0.89 -5.6 994,986 + Shewana3_0855 0.89 -4.0 995,055 - -3.4 995,087 + -0.6 995,148 + -3.9 995,286 + -3.8 995,462 + Shewana3_0856 0.12 -3.5 995,496 + Shewana3_0856 0.14 -4.8 995,504 - Shewana3_0856 0.15 -4.1 995,504 - Shewana3_0856 0.15 -4.1 995,583 - Shewana3_0856 0.19 -4.2 995,722 - Shewana3_0856 0.28 -3.5 995,788 - Shewana3_0856 0.31 -4.2 995,825 - Shewana3_0856 0.34 -2.5 996,024 + Shewana3_0856 0.45 -4.9 996,146 - Shewana3_0856 0.53 -4.5
Or see this region's nucleotide sequence