Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0827 and Shewana3_0828 are separated by 12 nucleotides Shewana3_0828 and Shewana3_0829 are separated by 78 nucleotides Shewana3_0829 and Shewana3_0830 are separated by 4 nucleotides Shewana3_0830 and Shewana3_0831 are separated by 15 nucleotides
Shewana3_0827: Shewana3_0827 - phage shock protein A, PspA (RefSeq), at 957,797 to 958,486
_0827
Shewana3_0828: Shewana3_0828 - hypothetical protein (RefSeq), at 958,499 to 958,912
_0828
Shewana3_0829: Shewana3_0829 - spermidine synthase (RefSeq), at 958,991 to 960,724
_0829
Shewana3_0830: Shewana3_0830 - hypothetical protein (RefSeq), at 960,729 to 961,628
_0830
Shewana3_0831: Shewana3_0831 - hypothetical protein (RefSeq), at 961,644 to 962,621
_0831
Position (kb) 958
959
960
961 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 958.002 kb on - strand at 958.366 kb on - strand, within Shewana3_0827 at 958.366 kb on - strand, within Shewana3_0827 at 958.432 kb on - strand at 958.531 kb on + strand at 958.539 kb on - strand at 958.555 kb on - strand, within Shewana3_0828 at 958.562 kb on + strand, within Shewana3_0828 at 958.622 kb on - strand, within Shewana3_0828 at 959.079 kb on - strand at 959.131 kb on + strand at 959.176 kb on + strand, within Shewana3_0829 at 959.217 kb on - strand, within Shewana3_0829 at 959.249 kb on - strand, within Shewana3_0829 at 959.263 kb on + strand, within Shewana3_0829 at 959.314 kb on - strand, within Shewana3_0829 at 959.339 kb on + strand, within Shewana3_0829 at 959.349 kb on + strand, within Shewana3_0829 at 959.428 kb on + strand, within Shewana3_0829 at 959.521 kb on + strand, within Shewana3_0829 at 959.743 kb on + strand, within Shewana3_0829 at 960.072 kb on - strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.120 kb on - strand, within Shewana3_0829 at 960.180 kb on + strand, within Shewana3_0829 at 960.202 kb on - strand, within Shewana3_0829 at 960.202 kb on - strand, within Shewana3_0829 at 960.213 kb on + strand, within Shewana3_0829 at 960.421 kb on + strand, within Shewana3_0829 at 960.587 kb on - strand at 960.685 kb on - strand at 960.726 kb on + strand at 960.943 kb on + strand, within Shewana3_0830 at 961.188 kb on - strand, within Shewana3_0830 at 961.193 kb on - strand, within Shewana3_0830 at 961.332 kb on - strand, within Shewana3_0830 at 961.399 kb on + strand, within Shewana3_0830 at 961.402 kb on + strand, within Shewana3_0830 at 961.414 kb on + strand, within Shewana3_0830 at 961.424 kb on - strand, within Shewana3_0830 at 961.424 kb on - strand, within Shewana3_0830 at 961.498 kb on - strand, within Shewana3_0830 at 961.498 kb on - strand, within Shewana3_0830
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 958,002 - +0.1 958,366 - Shewana3_0827 0.82 +0.7 958,366 - Shewana3_0827 0.82 -0.3 958,432 - -2.1 958,531 + -1.6 958,539 - +0.2 958,555 - Shewana3_0828 0.14 +0.0 958,562 + Shewana3_0828 0.15 +1.9 958,622 - Shewana3_0828 0.30 +0.0 959,079 - -0.3 959,131 + +0.0 959,176 + Shewana3_0829 0.11 +0.5 959,217 - Shewana3_0829 0.13 +0.4 959,249 - Shewana3_0829 0.15 -0.2 959,263 + Shewana3_0829 0.16 -0.5 959,314 - Shewana3_0829 0.19 -0.8 959,339 + Shewana3_0829 0.20 -0.1 959,349 + Shewana3_0829 0.21 +0.2 959,428 + Shewana3_0829 0.25 -0.5 959,521 + Shewana3_0829 0.31 -0.6 959,743 + Shewana3_0829 0.43 -0.6 960,072 - Shewana3_0829 0.62 -1.2 960,112 + Shewana3_0829 0.65 -3.3 960,112 + Shewana3_0829 0.65 -0.6 960,112 + Shewana3_0829 0.65 +0.4 960,112 + Shewana3_0829 0.65 -0.9 960,112 + Shewana3_0829 0.65 +0.6 960,120 - Shewana3_0829 0.65 +0.2 960,180 + Shewana3_0829 0.69 -0.3 960,202 - Shewana3_0829 0.70 -0.8 960,202 - Shewana3_0829 0.70 -0.3 960,213 + Shewana3_0829 0.70 -0.1 960,421 + Shewana3_0829 0.82 +0.6 960,587 - -0.2 960,685 - +0.5 960,726 + -0.0 960,943 + Shewana3_0830 0.24 -0.1 961,188 - Shewana3_0830 0.51 -1.6 961,193 - Shewana3_0830 0.52 -0.5 961,332 - Shewana3_0830 0.67 +0.0 961,399 + Shewana3_0830 0.74 +0.2 961,402 + Shewana3_0830 0.75 +0.4 961,414 + Shewana3_0830 0.76 -0.6 961,424 - Shewana3_0830 0.77 +0.3 961,424 - Shewana3_0830 0.77 -0.5 961,498 - Shewana3_0830 0.85 -0.3 961,498 - Shewana3_0830 0.85 +0.4
Or see this region's nucleotide sequence