Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0822
Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Sucrose 5 mM |
---|---|---|---|---|---|
remove | |||||
953,191 | - | Shewana3_0822 | 0.10 | -4.0 | |
953,358 | - | Shewana3_0822 | 0.35 | -1.8 | |
953,857 | - | +0.1 | |||
954,170 | + | -0.8 | |||
954,197 | + | Shewana3_0823 | 0.11 | -0.5 | |
954,205 | - | Shewana3_0823 | 0.11 | -0.5 | |
954,205 | - | Shewana3_0823 | 0.11 | -1.7 | |
954,244 | - | Shewana3_0823 | 0.14 | -1.5 | |
954,379 | + | Shewana3_0823 | 0.23 | -0.7 | |
954,431 | - | Shewana3_0823 | 0.26 | -1.1 | |
954,433 | + | Shewana3_0823 | 0.26 | -1.3 | |
954,492 | + | Shewana3_0823 | 0.30 | -1.2 | |
954,603 | - | Shewana3_0823 | 0.38 | -0.4 | |
954,608 | - | Shewana3_0823 | 0.38 | -0.8 | |
954,653 | + | Shewana3_0823 | 0.41 | -0.6 | |
954,653 | + | Shewana3_0823 | 0.41 | -0.6 | |
954,661 | - | Shewana3_0823 | 0.41 | -1.8 | |
954,701 | + | Shewana3_0823 | 0.44 | -2.6 | |
954,739 | + | Shewana3_0823 | 0.47 | +0.2 |
Or see this region's nucleotide sequence