Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0790 and Shewana3_0791 are separated by 168 nucleotides Shewana3_0791 and Shewana3_0792 are separated by 2 nucleotides Shewana3_0792 and Shewana3_0793 are separated by 7 nucleotides
Shewana3_0790: Shewana3_0790 - hypothetical protein (RefSeq), at 910,911 to 911,546
_0790
Shewana3_0791: Shewana3_0791 - UDP-N-acetylmuramate (RefSeq), at 911,715 to 913,112
_0791
Shewana3_0792: Shewana3_0792 - aromatic acid decarboxylase (RefSeq), at 913,115 to 913,774
_0792
Shewana3_0793: Shewana3_0793 - hypoxanthine phosphoribosyltransferase (RefSeq), at 913,782 to 914,312
_0793
Position (kb)
911
912
913
914 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 910.768 kb on - strand at 910.796 kb on - strand at 910.972 kb on - strand at 911.086 kb on + strand, within Shewana3_0790 at 911.099 kb on + strand, within Shewana3_0790 at 911.181 kb on - strand, within Shewana3_0790 at 911.181 kb on - strand, within Shewana3_0790 at 911.242 kb on - strand, within Shewana3_0790 at 911.407 kb on - strand, within Shewana3_0790 at 911.515 kb on + strand at 911.515 kb on + strand at 911.617 kb on - strand at 911.791 kb on + strand at 911.964 kb on + strand, within Shewana3_0791 at 911.964 kb on + strand, within Shewana3_0791 at 911.964 kb on + strand, within Shewana3_0791 at 912.344 kb on + strand, within Shewana3_0791 at 912.360 kb on + strand, within Shewana3_0791 at 912.841 kb on + strand, within Shewana3_0791 at 912.949 kb on + strand, within Shewana3_0791 at 913.977 kb on + strand, within Shewana3_0793 at 913.995 kb on + strand, within Shewana3_0793 at 913.995 kb on + strand, within Shewana3_0793
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 910,768 - +0.2 910,796 - -0.2 910,972 - -2.0 911,086 + Shewana3_0790 0.28 -0.8 911,099 + Shewana3_0790 0.30 +0.8 911,181 - Shewana3_0790 0.42 +0.2 911,181 - Shewana3_0790 0.42 +0.2 911,242 - Shewana3_0790 0.52 -0.3 911,407 - Shewana3_0790 0.78 +0.1 911,515 + +0.7 911,515 + -1.1 911,617 - -1.1 911,791 + -0.3 911,964 + Shewana3_0791 0.18 -2.0 911,964 + Shewana3_0791 0.18 -0.5 911,964 + Shewana3_0791 0.18 +0.1 912,344 + Shewana3_0791 0.45 -1.6 912,360 + Shewana3_0791 0.46 -1.0 912,841 + Shewana3_0791 0.81 -1.3 912,949 + Shewana3_0791 0.88 -2.9 913,977 + Shewana3_0793 0.37 +1.2 913,995 + Shewana3_0793 0.40 -0.6 913,995 + Shewana3_0793 0.40 -1.6
Or see this region's nucleotide sequence