Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0791

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0790 and Shewana3_0791 are separated by 168 nucleotidesShewana3_0791 and Shewana3_0792 are separated by 2 nucleotidesShewana3_0792 and Shewana3_0793 are separated by 7 nucleotides Shewana3_0790: Shewana3_0790 - hypothetical protein (RefSeq), at 910,911 to 911,546 _0790 Shewana3_0791: Shewana3_0791 - UDP-N-acetylmuramate (RefSeq), at 911,715 to 913,112 _0791 Shewana3_0792: Shewana3_0792 - aromatic acid decarboxylase (RefSeq), at 913,115 to 913,774 _0792 Shewana3_0793: Shewana3_0793 - hypoxanthine phosphoribosyltransferase (RefSeq), at 913,782 to 914,312 _0793 Position (kb) 911 912 913 914Strain fitness (log2 ratio) -3 -2 -1 0 1at 910.768 kb on - strandat 910.796 kb on - strandat 910.972 kb on - strandat 911.086 kb on + strand, within Shewana3_0790at 911.099 kb on + strand, within Shewana3_0790at 911.181 kb on - strand, within Shewana3_0790at 911.181 kb on - strand, within Shewana3_0790at 911.242 kb on - strand, within Shewana3_0790at 911.407 kb on - strand, within Shewana3_0790at 911.515 kb on + strandat 911.515 kb on + strandat 911.617 kb on - strandat 911.791 kb on + strandat 911.964 kb on + strand, within Shewana3_0791at 911.964 kb on + strand, within Shewana3_0791at 911.964 kb on + strand, within Shewana3_0791at 912.344 kb on + strand, within Shewana3_0791at 912.360 kb on + strand, within Shewana3_0791at 912.841 kb on + strand, within Shewana3_0791at 912.949 kb on + strand, within Shewana3_0791at 913.977 kb on + strand, within Shewana3_0793at 913.995 kb on + strand, within Shewana3_0793at 913.995 kb on + strand, within Shewana3_0793

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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910,768 - +0.2
910,796 - -0.2
910,972 - -2.0
911,086 + Shewana3_0790 0.28 -0.8
911,099 + Shewana3_0790 0.30 +0.8
911,181 - Shewana3_0790 0.42 +0.2
911,181 - Shewana3_0790 0.42 +0.2
911,242 - Shewana3_0790 0.52 -0.3
911,407 - Shewana3_0790 0.78 +0.1
911,515 + +0.7
911,515 + -1.1
911,617 - -1.1
911,791 + -0.3
911,964 + Shewana3_0791 0.18 -2.0
911,964 + Shewana3_0791 0.18 -0.5
911,964 + Shewana3_0791 0.18 +0.1
912,344 + Shewana3_0791 0.45 -1.6
912,360 + Shewana3_0791 0.46 -1.0
912,841 + Shewana3_0791 0.81 -1.3
912,949 + Shewana3_0791 0.88 -2.9
913,977 + Shewana3_0793 0.37 +1.2
913,995 + Shewana3_0793 0.40 -0.6
913,995 + Shewana3_0793 0.40 -1.6

Or see this region's nucleotide sequence